TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000628_2.0 # Protein # SECIS binding protein 2 (SBP2) # Zebrafish Length=982 Score E Sequences producing significant alignments: (Bits) Value KQ557219.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 147 3e-34 KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 98.6 3e-19 KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 35.0 5.9 > KQ557219.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold18, whole genome shotgun sequence Length=33548221 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 70/77 (91%), Positives = 76/77 (99%), Gaps = 0/77 (0%) Frame = +3 Query 625 YCNHVLSKEIDESVTLLLQELVRFQERVYQKEPSKAKAKRRLVMGLREVTKHMKLHKIKC 684 YCN VLSKEIDESVTLLLQELVRFQERVYQK+P+KAK+KRRLVMGLREVTKHMKLHKIKC Sbjct 9642369 YCNQVLSKEIDESVTLLLQELVRFQERVYQKDPTKAKSKRRLVMGLREVTKHMKLHKIKC 9642548 Query 685 VIISPNCEKIQAKGQNQ 701 VIISPNCEKIQAKG+++ Sbjct 9642549 VIISPNCEKIQAKGESR 9642599 Score = 87.0 bits (214), Expect(2) = 4e-27, Method: Compositional matrix adjust. Identities = 63/112 (56%), Positives = 72/112 (64%), Gaps = 13/112 (12%) Frame = +1 Query 58 RQLPMYNS-EHRWQQLNPGPGGPYLAYPILSSPQPPVSSDYATYYHAIMPTPCPPVMgfy 116 RQ PMYN E RW Q NP PGGPYLAYPILSSPQPPVS+DYA Y+ IMP PCPPVMGFY Sbjct 9634942 RQHPMYNGGELRWPQPNPSPGGPYLAYPILSSPQPPVSNDYA--YYQIMPAPCPPVMGFY 9635115 Query 117 ----qpfpgpyggpLLNPLS-DCSDRPLQPGQT-----PRARSGARTPVLQK 158 + GP +++P+S D +RPL G T R R R+ VL K Sbjct 9635116 QPFPGTYAGPVQAGVVSPVSADVGERPLPLGPTYGMAGQRGRGIPRSNVLTK 9635271 Score = 58.9 bits (141), Expect(2) = 4e-27, Method: Compositional matrix adjust. Identities = 30/49 (61%), Positives = 36/49 (73%), Gaps = 3/49 (6%) Frame = +3 Query 156 LQKP---MVQPIRAKRPVMRSVAVQKEVCAAGPDGRSKTVLLVDAAQQT 201 LQ+P + Q R +RP R +AVQKEVC PDGR+KTV+LVDAAQQT Sbjct 9635370 LQQPHLGVCQAPRGRRPPTRHIAVQKEVCTLTPDGRTKTVMLVDAAQQT 9635516 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 69/78 (88%), Positives = 74/78 (95%), Gaps = 0/78 (0%) Frame = +2 Query 730 YSVSQGLFNKLVSLTEEARRAYKEMVSaleqeqaeealKNVKKVPHHMGHSRNPSAASAI 789 +S SQGLFN+LVSLTEEAR+AYK+MVSALEQEQAEEALKN KKVPHHMGHSRN SAASAI Sbjct 9643241 FSFSQGLFNRLVSLTEEARKAYKDMVSALEQEQAEEALKNDKKVPHHMGHSRNHSAASAI 9643420 Query 790 SFCSVISEPISEVNEKEY 807 SFCS+ SEPISEVNEKEY Sbjct 9643421 SFCSIFSEPISEVNEKEY 9643474 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 79/160 (49%), Positives = 95/160 (59%), Gaps = 29/160 (18%) Frame = +2 Query 808 ETNWRTMVENADT---LESEPILTSRSSREQQDVpsapaqpsananpTI----------- 853 ETNWR+M+E++D +E+EP + S+ Q + A + Sbjct 9644648 ETNWRSMMESSDAPEPVETEPCRPAASAASQSNNSETSAATITTNTTSSSVVPGSTAPQP 9644827 Query 854 --------PTGREESRTDDRLEWASQQSTETGSLDGQ----LHssitsttstLVPGMLee 901 P R+E R DDRLE ASQ STETGSLDG L SSITSTTSTLVPGMLEE Sbjct 9644828 RTVPPTQGPAERDEVRADDRLELASQ-STETGSLDGSCRGPLTSSITSTTSTLVPGMLEE 9645004 Query 902 eeeeeeeeeeYSSAP--VPLPALSCRIESWVSKTLENLQL 939 EEE+EEEE+Y+ P V +P LS RI+SWVSKTLENL L Sbjct 9645005 AEEEDEEEEDYTPEPISVEVPTLSSRIDSWVSKTLENLNL 9645124 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/88 (58%), Positives = 60/88 (68%), Gaps = 8/88 (9%) Frame = +2 Query 180 VCAAGPD--GRS---KTVLLVDAAQQTDFPGEASGGVRCVSDQVSPQQWKNKPRRRR-Ts 233 VC GP G S K +L+ +DFPGE +G RC S+QVSPQ WKN+ +RRR + Sbjct 9636896 VCLVGPGLQGLSVNEKYMLIFFFLPPSDFPGEVAG--RCASEQVSPQMWKNRTKRRRASH 9637069 Query 234 qqessseqgaseaDIDSDSGYCSPKHNQ 261 E +EQGASEADIDSDSGYCSPKHNQ Sbjct 9637070 SAEGYNEQGASEADIDSDSGYCSPKHNQ 9637153 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/64 (61%), Positives = 42/64 (66%), Gaps = 10/64 (16%) Frame = +2 Query 1 QDVKLSAEVEPFIPQKKGVDSSLLPMSLCGEGGAEPTQ----------IPSYLITCYPFV 50 QDVKLS EVEPFIP +KG + SL+ MSL GE G IPSYLITCYPFV Sbjct 9634106 QDVKLSPEVEPFIPLRKGFEGSLVSMSLSGEAGGGGGGGASGGVEAAPIPSYLITCYPFV 9634285 Query 51 QENQ 54 QENQ Sbjct 9634286 QENQ 9634297 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 41/61 (67%), Gaps = 2/61 (3%) Frame = +3 Query 472 LLGTVGALHSKDGGVCVSGLKS--SSYTPPHNMLDSTAPRIKRGKEREIPKVKKTTAMKK 529 L+GT HS S L+ + + PHN LDSTAPR+KRGKEREIPKVK+ TA+KK Sbjct 9639309 LVGTTTPFHSSGSTSVPSMLRGHQQALSAPHNALDSTAPRVKRGKEREIPKVKRPTALKK 9639488 Query 530 I 530 + Sbjct 9639489 V 9639491 Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/55 (91%), Positives = 52/55 (95%), Gaps = 0/55 (0%) Frame = +2 Query 570 ENGLSVPSDASLSPASQNSPYSITpvsqgspgssgigspmaasaITKIHSRRFRE 624 ENGLSVPSD SLSPASQNSP SITPVSQGSP SSGIGSPMA++AITKIHSRRFRE Sbjct 9640562 ENGLSVPSDGSLSPASQNSPCSITPVSQGSPASSGIGSPMASNAITKIHSRRFRE 9640726 Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust. Identities = 24/37 (65%), Positives = 26/37 (70%), Gaps = 7/37 (19%) Frame = +1 Query 422 DEDEFPDLATGSAAQRS-KPEPA------QPKLTKSL 451 DEDEFPDLA G + QRS KPEPA QPKL K+L Sbjct 9638443 DEDEFPDLAAGGSVQRSTKPEPALPQTHTQPKLPKNL 9638553 Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +1 Query 273 NTAVHTAASHWGSVSSPGVQKPWSDRSTLFHRGS--RTPEQRSYTQMSFV 320 N + A W +V+S K W DR+ FHR + PEQR+ Q+ F+ Sbjct 9637930 NIFFYLPAGTWVNVASQATPKYWRDRNGQFHRADQRKIPEQRNLPQVKFL 9638079 Score = 35.8 bits (81), Expect = 4.0, Method: Compositional matrix adjust. Identities = 21/39 (54%), Positives = 26/39 (67%), Gaps = 1/39 (3%) Frame = +1 Query 530 IILQEREVKKGKSSADQSVCEAEEQRD-TLSFTDTLTQE 567 IIL+ERE KKGKS A+Q +E D L FTD L++E Sbjct 9639619 IILKEREGKKGKSCAEQDSAGPDEHGDECLQFTDDLSRE 9639735 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/83 (66%), Positives = 69/83 (83%), Gaps = 5/83 (6%) Frame = +1 Query 625 YCNHVLSKEIDESVTLLLQELVRFQERVYQKEPSKAKAKRRLVMGLREVTKHMKLHKIKC 684 YC+ +L K++DE VT LL+ELVRFQ+R+YQK+P KA+ KRR+VMGLREV KH+KL K+KC Sbjct 26130313 YCSQMLRKDLDECVTSLLKELVRFQDRLYQKDPMKARMKRRIVMGLREVLKHLKLKKVKC 26130492 Query 685 VIISPNCEKIQAKGQNQTPIHKH 707 VIISPNCE+IQ+KG I KH Sbjct 26130493 VIISPNCERIQSKG-----IQKH 26130546 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (63%), Gaps = 8/54 (15%) Frame = +1 Query 484 GGVCVSGLKSSSYTPP--------HNMLDSTAPRIKRGKEREIPKVKKTTAMKK 529 GG+ V +SS+ P HN LDST+P +K+GK+RE+PK KK T +KK Sbjct 26128246 GGLPVVQKQSSALKKPPWQQDKIAHNPLDSTSPLVKKGKQREVPKAKKPTPLKK 26128407 > KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold13, whole genome shotgun sequence Length=22457735 Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 26/51 (51%), Gaps = 0/51 (0%) Frame = +1 Query 616 KIHSRRFREYCNHVLSKEIDESVTLLLQELVRFQERVYQKEPSKAKAKRRL 666 K+HS FR +C+ S E T + V F+ Y+KEP + K ++ L Sbjct 18871366 KLHSSVFRGFCDISCSATTGEEGTSFYSQFVLFESV*YEKEPQQLKIEQML 18871518 Lambda K H a alpha 0.314 0.129 0.381 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 200709504650 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40