TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
           25 sequences; 708,396,389 total letters



Query= SPP00000663_2.0 # Protein # Phosphoseryl-tRNA kinase  (PSTK) #
Zebrafish

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  93.6    5e-20
  KQ557219.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  33.9    1.5  


> KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, 
whole genome shotgun sequence
Length=25629008

 Score = 93.6 bits (231),  Expect = 5e-20, Method: Compositional matrix adjust.
 Identities = 62/217 (29%), Positives = 105/217 (48%), Gaps = 49/217 (23%)
 Frame = +3

Query  24        GKSRLAEQLRGHAHSRGWRTLTVTYDLLIPERDWRQAEWKQHRKTVLACLERFLQHSLSE  83
                  KS +   L    ++  + ++ + + +L     ++ + WK +R+ VL C+E+ L+    E
Sbjct  13454535  AKSEVPFDLNFSKYAIFFLSVIMYFFIL-----FQHSNWKSYRQAVLQCIEQVLEQP--E  13454693

Query  84        QTHTLPETHTLCEQADAGVWMR-FEQLLRDQSVFLSHTHSQPLVLLLDDNFYYQSMRQQI  142
                     LP    +    +   W    + LL+ +    SHT   PL+ LLDDNFYY SMR ++
Sbjct  13454694  VVVELPSNPLI----NGAAWQPCVQALLQPKE---SHTDGTPLLFLLDDNFYYPSMRYEV  13454852

Query  143       QQLARR------------------------------STCGFCQVFLQCSLGVCVQRNRLR  172
                  QLAR+                               + GFCQV+LQC L  C++RN+ R
Sbjct  13454853  YQLARKRKDSLSKEYAPQHPEVFFCFVFLNMSIVVAVSLGFCQVYLQCDLETCIRRNQSR  13455032

Query  173       VRPLPDAVLLQMSERLEPPDSR----DKHSLTLVAVN  205
                  +P+P  V+++M +RLE P+ +    +  S++L + N
Sbjct  13455033  PKPIPIKVIMEMEKRLEFPNPQKNPWESQSISLNSTN  13455143


 Score = 58.9 bits (141),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 27/43 (63%), Positives = 31/43 (72%), Gaps = 0/43 (0%)
 Frame = +1

Query  12        ACLCLLFGLPAAGKSRLAEQLRGHAHSRGWRTLTVTYDLLIPE  54
                 ACLC+L GLPAAGKS L  ++ G A  RGWR   V+YD LIPE
Sbjct  13454056  ACLCVLCGLPAAGKSTLTRRIVGTAAERGWRAAVVSYDELIPE  13454184


> KQ557219.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold18, 
whole genome shotgun sequence
Length=33548221

 Score = 33.9 bits (76),  Expect = 1.5, Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 0/36 (0%)
 Frame = +3

Query  117       LSHTHSQPLVLLLDDNFYYQSMRQQIQQLARRSTCG  152
                 L+H+HS PL+    D F +QS+R+Q  Q  R S  G
Sbjct  14628756  LTHSHSPPLMHCHHDTFLHQSLREQKHQFTRTSARG  14628863



Lambda      K        H        a         alpha
   0.325    0.135    0.425    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 21015501381


  Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
    Posted date:  Oct 21, 2016  4:48 PM
  Number of letters in database: 708,396,389
  Number of sequences in database:  25



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40