TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000647_2.0 # Protein # Methionine-R-sufoxide reductase 3 (MSRB3) # Zebrafish Length=186 Score E Sequences producing significant alignments: (Bits) Value KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 64.7 2e-14 KQ557209.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 67.0 2e-11 KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 39.3 0.023 KQ557208.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 35.8 0.27 KQ557215.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 32.3 3.5 KQ557205.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 31.6 7.3 > KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold13, whole genome shotgun sequence Length=22457735 Score = 64.7 bits (156), Expect(2) = 2e-14, Method: Compositional matrix adjust. Identities = 40/123 (33%), Positives = 56/123 (46%), Gaps = 41/123 (33%) Frame = -3 Query 89 SEKKFDSGSGWPSFFDL---INKD----AIAQTDDFSYGMHRVETTCS------------ 129 SE K+DSG+GWP+F + +D +I + D S G E C Sbjct 8752434 SEAKYDSGTGWPAFKEAHGTWERDESHASIVRRPDNSLGSAGTEVLCKNVSYFLIYLKA* 8752255 Query 130 ----------------------QCGAHLGHLFDDGPRPTKKRYCINSASLSFQPKNSATE 167 QC AHLGH+F+DGP PT +R+CINSA+L F+P+ + Sbjct 8752254 FA*RRLVTQYL*IYID*CIFVIQCDAHLGHVFEDGPDPTGQRFCINSAALKFKPRENGVA 8752075 Query 168 EVE 170 + E Sbjct 8752074 DTE 8752066 Score = 35.0 bits (79), Expect(2) = 2e-14, Method: Compositional matrix adjust. Identities = 13/24 (54%), Positives = 17/24 (71%), Gaps = 0/24 (0%) Frame = -1 Query 64 FTGKYVDNKEEGTYHCVVCGAPLF 87 F+G Y+++ E G YHCV C PLF Sbjct 8752592 FSGIYLNHFEMGMYHCVCCDVPLF 8752521 > KQ557209.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold8, whole genome shotgun sequence Length=19682451 Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/51 (65%), Positives = 35/51 (69%), Gaps = 8/51 (16%) Frame = +1 Query 123 RVETTCS--------QCGAHLGHLFDDGPRPTKKRYCINSASLSFQPKNSA 165 R T CS QCGAHLGHLFDDGP+PT KRYCINSASL+FQ A Sbjct 17232586 RFHTGCSVLLNVPVFQCGAHLGHLFDDGPKPTGKRYCINSASLAFQAAGPA 17232738 Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 28/39 (72%), Positives = 35/39 (90%), Gaps = 0/39 (0%) Frame = +1 Query 25 SGTCRSKKTWPKTFPEEELRKRLTPMQYHVTQQKGTESA 63 +G CRSKKTWP +FP+EELRKRLTP Q+HVTQ++GTE + Sbjct 17230420 TGACRSKKTWPVSFPQEELRKRLTPKQFHVTQERGTERS 17230536 Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 23/33 (70%), Positives = 30/33 (91%), Gaps = 0/33 (0%) Frame = +2 Query 98 GWPSFFDLINKDAIAQTDDFSYGMHRVETTCSQ 130 GWPSFFDL+ +++++ DDFSYG+HRVETTCSQ Sbjct 17231381 GWPSFFDLLKEESVSLADDFSYGLHRVETTCSQ 17231479 Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 19/28 (68%), Positives = 24/28 (86%), Gaps = 0/28 (0%) Frame = +2 Query 60 TESAFTGKYVDNKEEGTYHCVVCGAPLF 87 + SAFTG++ +K+EGTYHCVVCG PLF Sbjct 17230793 SHSAFTGEFTYHKDEGTYHCVVCGGPLF 17230876 Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 18/26 (69%), Positives = 23/26 (88%), Gaps = 0/26 (0%) Frame = +3 Query 1 MSGFNLLHLVSQGQPVKLKACGLPSG 26 MSGFNLLHL+++ QPV L++C LPSG Sbjct 17226624 MSGFNLLHLITKSQPVPLRSCSLPSG 17226701 > KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, whole genome shotgun sequence Length=25629008 Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust. Identities = 17/44 (39%), Positives = 23/44 (52%), Gaps = 0/44 (0%) Frame = -2 Query 70 DNKEEGTYHCVVCGAPLFMSEKKFDSGSGWPSFFDLINKDAIAQ 113 D G Y C C PLF S KF S WP+F D + +D++ + Sbjct 25287988 DLLHAGLYVCSRCLHPLFSSRSKFPHSSPWPAFRDTLREDSVTK 25287857 > KQ557208.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold7, whole genome shotgun sequence Length=25108055 Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 25/44 (57%), Gaps = 1/44 (2%) Frame = +1 Query 120 GMHRVETTCSQCGAHLGHLF-DDGPRPTKKRYCINSASLSFQPK 162 G+ + C +CG LGH F +DGP R+ I S+SL F PK Sbjct 11534611 GVMFSQVKCGKCGNGLGHEFVNDGPAKGVSRF*IFSSSLKFVPK 11534742 Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 24/39 (62%), Gaps = 0/39 (0%) Frame = +2 Query 75 GTYHCVVCGAPLFMSEKKFDSGSGWPSFFDLINKDAIAQ 113 G Y C C LF S K++ S WP+F + I+++++++ Sbjct 11534372 GIYVCSKCDHELFSSRSKYEHSSPWPAFTETIHENSVSK 11534488 > KQ557215.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold14, whole genome shotgun sequence Length=28402361 Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust. Identities = 33/111 (30%), Positives = 49/111 (44%), Gaps = 22/111 (20%) Frame = +1 Query 18 LKACGLPSGTCRSKKTWPKTFPEEELRKRLTPMQYHVTQQKGTESAFTGKYVDNKEEGTY 77 LK CG+ S + KTF + RKRLT +YH V ++G Y Sbjct 10175923 LKCCGMTSFLRTFQ*G*IKTFVPPQ*RKRLTA-RYH-----------KCLIVSCTQQGYY 10176066 Query 78 HCVVCGAPLFMSEKKFDSGSGWPSFFDLINKDAIAQTDDFSYGMHRVETTC 128 + ++C F+ E+ GW SFF LIN I + ++ + R + TC Sbjct 10176067 YKLLC----FI*EQ-----GGWNSFFSLINIIFIKKLHTITF-LARSKATC 10176189 > KQ557205.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold4, whole genome shotgun sequence Length=26266306 Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 27/62 (44%), Gaps = 10/62 (16%) Frame = -1 Query 91 KKFDSGSGWPSFFDLINKDAIAQTDDFSYGMHRVETTCSQCGAHLGHLFDDGPRPTKKRY 150 K+ + SF INK+ +TD +T C C H+ ++ PRP + R Sbjct 7638868 KQVSITAAGASFLL*INKNI--ETDP--------DTCCKSCVIHVAQIYSSSPRPFESRL 7638719 Query 151 CI 152 CI Sbjct 7638718 CI 7638713 Lambda K H a alpha 0.314 0.130 0.398 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 17001308088 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40