TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000646_2.0 # Protein # Methionine-R-sufoxide reductase 2 (MSRB2) # Zebrafish Length=180 Score E Sequences producing significant alignments: (Bits) Value KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 145 4e-44 KQ557209.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 52.0 8e-07 KQ557208.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 37.0 0.11 KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 34.3 0.91 KQ557220.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 31.6 7.3 > KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold13, whole genome shotgun sequence Length=22457735 Score = 145 bits (367), Expect(2) = 4e-44, Method: Compositional matrix adjust. Identities = 74/126 (59%), Positives = 80/126 (63%), Gaps = 40/126 (32%) Frame = -3 Query 88 CVCCDSPLFSSEAKYDAGAGWPSFCEAHGTWEKDESHANIVRRPDNSLGSTGTEVICKH- 146 C C SSEAKYD+G GWP+F EAHGTWE+DESHA+IVRRPDNSLGS GTEV+CK+ Sbjct 8752446 CFC------SSEAKYDSGTGWPAFKEAHGTWERDESHASIVRRPDNSLGSAGTEVLCKNV 8752285 Query 147 ---------------------------------CDAHLGHVFEDGPDPTGQRFCINSVAL 173 CDAHLGHVFEDGPDPTGQRFCINS AL Sbjct 8752284 SYFLIYLKA*FA*RRLVTQYL*IYID*CIFVIQCDAHLGHVFEDGPDPTGQRFCINSAAL 8752105 Query 174 NFKPRE 179 FKPRE Sbjct 8752104 KFKPRE 8752087 Score = 53.5 bits (127), Expect(2) = 4e-44, Method: Compositional matrix adjust. Identities = 22/25 (88%), Positives = 23/25 (92%), Gaps = 0/25 (0%) Frame = -1 Query 72 PFSGIYLNHNEVGMYHCVCCDSPLF 96 PFSGIYLNH E+GMYHCVCCD PLF Sbjct 8752595 PFSGIYLNHFEMGMYHCVCCDVPLF 8752521 Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 25/32 (78%), Positives = 31/32 (97%), Gaps = 0/32 (0%) Frame = -2 Query 39 GLQSLTRYDQSTDWQRKLSPEQYVVTREKGTE 70 GL+SLTRY+++TDWQ+KL+PEQY VTREKGTE Sbjct 8753419 GLKSLTRYNKTTDWQKKLTPEQYFVTREKGTE 8753324 > KQ557209.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold8, whole genome shotgun sequence Length=19682451 Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 20/30 (67%), Positives = 26/30 (87%), Gaps = 0/30 (0%) Frame = +1 Query 147 CDAHLGHVFEDGPDPTGQRFCINSVALNFK 176 C AHLGH+F+DGP PTG+R+CINS +L F+ Sbjct 17232634 CGAHLGHLFDDGPKPTGKRYCINSASLAFQ 17232723 Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust. Identities = 14/30 (47%), Positives = 17/30 (57%), Gaps = 0/30 (0%) Frame = +2 Query 73 FSGIYLNHNEVGMYHCVCCDSPLFSSEAKY 102 F+G + H + G YHCV C PLF A Y Sbjct 17230805 FTGEFTYHKDEGTYHCVVCGGPLFR*GALY 17230894 > KQ557208.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold7, whole genome shotgun sequence Length=25108055 Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust. Identities = 15/31 (48%), Positives = 20/31 (65%), Gaps = 0/31 (0%) Frame = +2 Query 84 GMYHCVCCDSPLFSSEAKYDAGAGWPSFCEA 114 G+Y C CD LFSS +KY+ + WP+F E Sbjct 11534372 GIYVCSKCDHELFSSRSKYEHSSPWPAFTET 11534464 > KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, whole genome shotgun sequence Length=25629008 Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 0/28 (0%) Frame = -2 Query 84 GMYHCVCCDSPLFSSEAKYDAGAGWPSF 111 G+Y C C PLFSS +K+ + WP+F Sbjct 25287973 GLYVCSRCLHPLFSSRSKFPHSSPWPAF 25287890 > KQ557220.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold19, whole genome shotgun sequence Length=31600912 Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust. Identities = 16/45 (36%), Positives = 22/45 (49%), Gaps = 2/45 (4%) Frame = +2 Query 115 HGTWEKDESHANIVRRPDNSLGSTGTEVICKH--CDAHLGHVFED 157 H W+ + H ++VR SL STG IC CD H+F + Sbjct 3423659 HRQWKLKKRHPSLVRPLSTSLTSTGFGAICSRQICDFMAFHIFSN 3423793 Lambda K H a alpha 0.318 0.134 0.421 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 15584532414 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40