TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000644_2.0 # Protein # Methionine-R-sufoxide reductase 1b (MSRB1b) # Zebrafish Length=104 Score E Sequences producing significant alignments: (Bits) Value KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 92.0 7e-31 KQ557208.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 77.8 2e-28 KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 29.6 5.9 KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 29.6 6.6 KQ557219.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 29.3 8.1 KQ557212.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 29.3 8.8 > KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, whole genome shotgun sequence Length=25629008 Score = 92.0 bits (227), Expect(2) = 7e-31, Method: Composition-based stats. Identities = 39/54 (72%), Positives = 45/54 (83%), Gaps = 0/54 (0%) Frame = -2 Query 14 DHFKPGIYACSQCGHPLFSSRSKYEHSSPWPAFTETIREDSVTKMMETLTAYKV 67 D G+Y CS+C HPLFSSRSK+ HSSPWPAF +T+REDSVTKMME LTA+KV Sbjct 25287988 DLLHAGLYVCSRCLHPLFSSRSKFPHSSPWPAFRDTLREDSVTKMMEILTAFKV 25287827 Score = 61.6 bits (148), Expect(2) = 7e-31, Method: Compositional matrix adjust. Identities = 27/44 (61%), Positives = 35/44 (80%), Gaps = 0/44 (0%) Frame = -1 Query 61 TLTAYKVLCGKCGNGLGHEFLNDGPEEGLSRFXIFSHSLKFVPK 104 +++ +VLCGK G+GLGH+ LNDGPE G SRF IFSHS+ F+P Sbjct 25287773 SVSPSQVLCGKYGSGLGHQLLNDGPENGTSRF*IFSHSIHFIPN 25287642 Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust. Identities = 14/19 (74%), Positives = 16/19 (84%), Gaps = 0/19 (0%) Frame = -1 Query 1 MSFCSFFGKEFYKDHFKPG 19 MSFC F G+E Y+DHFKPG Sbjct 25288724 MSFCRFGGEEIYQDHFKPG 25288668 > KQ557208.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold7, whole genome shotgun sequence Length=25108055 Score = 77.8 bits (190), Expect(2) = 2e-28, Method: Compositional matrix adjust. Identities = 38/52 (73%), Positives = 41/52 (79%), Gaps = 0/52 (0%) Frame = +2 Query 16 FKPGIYACSQCGHPLFSSRSKYEHSSPWPAFTETIREDSVTKMMETLTAYKV 67 F GIY CS+C H LFSSRSKYEHSSPWPAFTETI E+SV+K E AYKV Sbjct 11534363 FFSGIYVCSKCDHELFSSRSKYEHSSPWPAFTETIHENSVSKFKERPGAYKV 11534518 Score = 67.4 bits (163), Expect(2) = 2e-28, Method: Compositional matrix adjust. Identities = 31/39 (79%), Positives = 35/39 (90%), Gaps = 0/39 (0%) Frame = +1 Query 66 KVLCGKCGNGLGHEFLNDGPEEGLSRFXIFSHSLKFVPK 104 +V CGKCGNGLGHEF+NDGP +G+SRF IFS SLKFVPK Sbjct 11534626 QVKCGKCGNGLGHEFVNDGPAKGVSRF*IFSSSLKFVPK 11534742 Score = 55.8 bits (133), Expect(2) = 1e-08, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 14/73 (19%) Frame = +3 Query 19 GIYACSQCGHPLFSSRSKYEHSSPWPAFTETIREDSVTKMMETLTAY------------- 65 G+Y CS+CG LFSS SK+EHSSP A + +R + T T Sbjct 11535981 GVYVCSECGQKLFSSTSKFEHSSPETASQDILRHGDPLRASLTFTLITSNVFMRTF*NYN 11536160 Query 66 -KVLCGKCGNGLG 77 ++ CGKCGNGLG Sbjct 11536161 PQICCGKCGNGLG 11536199 Score = 21.9 bits (45), Expect(2) = 1e-08, Method: Compositional matrix adjust. Identities = 9/13 (69%), Positives = 11/13 (85%), Gaps = 0/13 (0%) Frame = +2 Query 92 FXIFSHSLKFVPK 104 F +FS SLKF+PK Sbjct 11536226 F*VFSSSLKFIPK 11536264 Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 23/32 (72%), Gaps = 0/32 (0%) Frame = +2 Query 1 MSFCSFFGKEFYKDHFKPGIYACSQCGHPLFS 32 MSFCSF G E +KDHFKPGI+ + + +F+ Sbjct 11533214 MSFCSFVGGEVFKDHFKPGIFFSTVTPYDVFT 11533309 > KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold13, whole genome shotgun sequence Length=22457735 Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 21/34 (62%), Gaps = 1/34 (3%) Frame = +2 Query 16 FKPGIYACSQCGHPLFSSRSKYEHSSPWPAFTET 49 F+ IY CS G+ L+ K++H S WP F+ET Sbjct 9246029 FQLVIY-CSCAGYRLYRG*KKFQHDSSWPHFSET 9246127 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (52%), Gaps = 8/58 (14%) Frame = +3 Query 20 IYACSQCGHPLFSSRSKYEHSSPWPAFTETIREDSVTKMMETLTAYKVLCG--KCGNG 75 ++ C+Q SRSK H++P+ + IR++ V M + K++C KC NG Sbjct 708276 VFICAQL------SRSK*HHNAPYSYLSLLIRKNMVLLMRKENLMSKIICWKYKCTNG 708431 > KQ557219.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold18, whole genome shotgun sequence Length=33548221 Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +2 Query 68 LCGKCGNGLGHEFLNDGPEEGLSRFXI--FSHSLKFVPK 104 +C + GNGL H + G+SRF + F+H LK P+ Sbjct 2178959 ICCRTGNGLLHTSGHVSQLHGVSRFSVEHFNHKLKLAPR 2179075 > KQ557212.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold11, whole genome shotgun sequence Length=29398440 Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 0/28 (0%) Frame = +2 Query 20 IYACSQCGHPLFSSRSKYEHSSPWPAFT 47 I + + C HPLF+ S EH P AFT Sbjct 29179898 ISSTTLCSHPLFAHNSHLEHKHPKAAFT 29179981 Lambda K H a alpha 0.323 0.138 0.452 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 5903253850 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40