TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000645_2.0 # Protein # Methionine-R-sufoxide reductase 1a (MSRB1a) # Zebrafish Length=110 Score E Sequences producing significant alignments: (Bits) Value KQ557208.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 87.4 3e-32 KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 76.3 7e-24 KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 30.4 4.4 > KQ557208.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold7, whole genome shotgun sequence Length=25108055 Score = 87.4 bits (215), Expect(2) = 3e-32, Method: Compositional matrix adjust. Identities = 42/52 (81%), Positives = 48/52 (92%), Gaps = 0/52 (0%) Frame = +2 Query 16 FESGMYVCAQCGYELFSSRSKYEHSSPWPAFTETIHEDSVSKQEERWGAYKV 67 F SG+YVC++C +ELFSSRSKYEHSSPWPAFTETIHE+SVSK +ER GAYKV Sbjct 11534363 FFSGIYVCSKCDHELFSSRSKYEHSSPWPAFTETIHENSVSKFKERPGAYKV 11534518 Score = 71.2 bits (173), Expect(2) = 3e-32, Method: Compositional matrix adjust. Identities = 33/41 (80%), Positives = 37/41 (90%), Gaps = 0/41 (0%) Frame = +1 Query 66 KVRCGKCGNGLGHEFVNDGPKHGLSRFXIFSSSLKFIPKVK 106 +V+CGKCGNGLGHEFVNDGP G+SRF IFSSSLKF+PK K Sbjct 11534626 QVKCGKCGNGLGHEFVNDGPAKGVSRF*IFSSSLKFVPKGK 11534748 Score = 49.3 bits (116), Expect(2) = 3e-07, Method: Compositional matrix adjust. Identities = 27/73 (37%), Positives = 38/73 (52%), Gaps = 14/73 (19%) Frame = +3 Query 19 GMYVCAQCGYELFSSRSKYEHSSPWPAFTETIHEDSVSKQEERWGAY------------- 65 G+YVC++CG +LFSS SK+EHSSP A + + + + Sbjct 11535981 GVYVCSECGQKLFSSTSKFEHSSPETASQDILRHGDPLRASLTFTLITSNVFMRTF*NYN 11536160 Query 66 -KVRCGKCGNGLG 77 ++ CGKCGNGLG Sbjct 11536161 PQICCGKCGNGLG 11536199 Score = 24.3 bits (51), Expect(2) = 3e-07, Method: Composition-based stats. Identities = 12/15 (80%), Positives = 13/15 (87%), Gaps = 0/15 (0%) Frame = +2 Query 90 SRFXIFSSSLKFIPK 104 S F +FSSSLKFIPK Sbjct 11536220 SCF*VFSSSLKFIPK 11536264 Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 0/32 (0%) Frame = +2 Query 1 MSFCSFSGGEIYKDHFESGMYVCAQCGYELFS 32 MSFCSF GGE++KDHF+ G++ Y++F+ Sbjct 11533214 MSFCSFVGGEVFKDHFKPGIFFSTVTPYDVFT 11533309 Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust. Identities = 11/19 (58%), Positives = 17/19 (89%), Gaps = 0/19 (0%) Frame = +2 Query 1 MSFCSFSGGEIYKDHFESG 19 MS+CSFS GE+Y+++F+ G Sbjct 11535563 MSYCSFSVGEVYRNNFQPG 11535619 > KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, whole genome shotgun sequence Length=25629008 Score = 76.3 bits (186), Expect(2) = 7e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 0/58 (0%) Frame = -2 Query 11 IYKDHFESGMYVCAQCGYELFSSRSKYEHSSPWPAFTETIHEDSVSKQEERWGAYKVR 68 + D +G+YVC++C + LFSSRSK+ HSSPWPAF +T+ EDSV+K E A+KVR Sbjct 25287997 VTSDLLHAGLYVCSRCLHPLFSSRSKFPHSSPWPAFRDTLREDSVTKMMEILTAFKVR 25287824 Score = 53.9 bits (128), Expect(2) = 7e-24, Method: Compositional matrix adjust. Identities = 24/39 (62%), Positives = 31/39 (79%), Gaps = 0/39 (0%) Frame = -1 Query 66 KVRCGKCGNGLGHEFVNDGPKHGLSRFXIFSSSLKFIPK 104 +V CGK G+GLGH+ +NDGP++G SRF IFS S+ FIP Sbjct 25287758 QVLCGKYGSGLGHQLLNDGPENGTSRF*IFSHSIHFIPN 25287642 Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust. Identities = 13/19 (68%), Positives = 15/19 (79%), Gaps = 0/19 (0%) Frame = -1 Query 1 MSFCSFSGGEIYKDHFESG 19 MSFC F G EIY+DHF+ G Sbjct 25288724 MSFCRFGGEEIYQDHFKPG 25288668 > KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold13, whole genome shotgun sequence Length=22457735 Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust. Identities = 12/27 (44%), Positives = 17/27 (63%), Gaps = 0/27 (0%) Frame = +2 Query 23 CAQCGYELFSSRSKYEHSSPWPAFTET 49 C+ GY L+ K++H S WP F+ET Sbjct 9246047 CSCAGYRLYRG*KKFQHDSSWPHFSET 9246127 Lambda K H a alpha 0.319 0.135 0.435 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 5903250100 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40