TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000620_2.0 # Protein # Glutathione peroxidase 8 (GPx8) # Zebrafish Length=153 Score E Sequences producing significant alignments: (Bits) Value KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 153 4e-41 KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 106 7e-25 KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 48.1 1e-05 KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 42.7 7e-04 KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 40.8 0.003 KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 34.7 0.36 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 153 bits (387), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 72/93 (77%), Positives = 82/93 (88%), Gaps = 0/93 (0%) Frame = +3 Query 27 KVSLVVNVASGSELTEQSYRALQELHRELGTSHFNVLAFPCSQYGDTESGTSREIEAFAK 86 + SLVVNVAS + TE SY++LQELHRELGTSHFNVLAFPC Q+GDTE G SR+IEAFAK Sbjct 24957945 QASLVVNVASHCQHTEASYKSLQELHRELGTSHFNVLAFPCGQFGDTERGLSRDIEAFAK 24958124 Query 87 SNYGVTFPIFNKIKIMGSEAEPAFRFLTGRKWN 119 S YGVTFP F+KIKI+G+EAEPAFRFLTGR+ N Sbjct 24958125 STYGVTFPFFSKIKILGTEAEPAFRFLTGRQEN 24958223 Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 24/37 (65%), Positives = 30/37 (81%), Gaps = 0/37 (0%) Frame = +2 Query 117 KWNFWKFLVSPEGQVVRFWKPEEPVSDIRKEATTLVR 153 KWNFWKFLV+ EG+V+RFWK +E + +RKE T LVR Sbjct 24959423 KWNFWKFLVNQEGKVIRFWKTDESMESVRKEVTALVR 24959533 Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 24/28 (86%), Positives = 27/28 (96%), Gaps = 0/28 (0%) Frame = +1 Query 1 RKTKDFYSYEVKDARGRTVSLEKYRGKV 28 R+ KDFYS+EVKDA+GRTVSLEKYRGKV Sbjct 24957700 RRQKDFYSFEVKDAKGRTVSLEKYRGKV 24957783 > KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold23, whole genome shotgun sequence Length=30408201 Score = 106 bits (264), Expect = 7e-25, Method: Composition-based stats. Identities = 47/95 (49%), Positives = 68/95 (72%), Gaps = 0/95 (0%) Frame = +3 Query 21 LEKYRGKVSLVVNVASGSELTEQSYRALQELHRELGTSHFNVLAFPCSQYGDTESGTSRE 80 L R +VSLVVNVAS T+Q YR LQ+L R+ G HFNVLAFPC+Q+G E G+ ++ Sbjct 25623387 LVSLRTQVSLVVNVASECGFTDQHYRDLQQLQRDFGPFHFNVLAFPCNQFGQQEPGSDKD 25623566 Query 81 IEAFAKSNYGVTFPIFNKIKIMGSEAEPAFRFLTG 115 I++F ++ YGV+FP+F+KI ++G+ A ++ L G Sbjct 25623567 IDSFVRTVYGVSFPLFSKIAVVGTGANNVYKHLAG 25623671 Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 0/36 (0%) Frame = +2 Query 118 WNFWKFLVSPEGQVVRFWKPEEPVSDIRKEATTLVR 153 WNFWKFL+ +G+VV W P+ PV++IR + +VR Sbjct 25625123 WNFWKFLIDVDGRVVDAWGPKVPVTEIRPKIADMVR 25625230 Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust. Identities = 18/28 (64%), Positives = 24/28 (86%), Gaps = 0/28 (0%) Frame = +2 Query 2 KTKDFYSYEVKDARGRTVSLEKYRGKVS 29 K KDFY+++V ++RG+ VSLEKYRG VS Sbjct 25622366 KQKDFYTFKVVNSRGKLVSLEKYRGSVS 25622449 > KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold12, whole genome shotgun sequence Length=28566418 Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 33/68 (49%), Gaps = 0/68 (0%) Frame = +3 Query 4 KDFYSYEVKDARGRTVSLEKYRGKVSLVVNVASGSELTEQSYRALQELHRELGTSHFNVL 63 K FY K G + SL +GKV LV NVAS T + Y + ELH +L Sbjct 15207093 KRFYDLTAKLLSGESFSLSTLKGKVVLVENVASL*GTTVRDYTQMNELHSRFSAEGLVIL 15207272 Query 64 AFPCSQYG 71 PC+Q+G Sbjct 15207273 GVPCNQFG 15207296 > KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold15, whole genome shotgun sequence Length=30170098 Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/107 (32%), Positives = 42/107 (39%), Gaps = 32/107 (30%) Frame = -3 Query 7 YSYEVKDARG-RTVSLEKYRGKVSLVVNVASGSELTEQ---------------------- 43 Y Y + G R V+ + GK L VNVA+ LT Q Sbjct 21050585 YQYNARTLNGSRAVNFGDFAGKTVLFVNVATY*GLTFQYVGKQLHTVGFVT*ALLHSSLK 21050406 Query 44 ------SYR---ALQELHRELGTSHFNVLAFPCSQYGDTESGTSREI 81 S+R AL LH EL +L FPC+Q+G E GT EI Sbjct 21050405 FFWFVCSWRFLSALNALHEELKPLGLTILGFPCNQFGKQEPGTKSEI 21050265 Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust. Identities = 15/31 (48%), Positives = 20/31 (65%), Gaps = 0/31 (0%) Frame = -2 Query 117 KWNFWKFLVSPEGQVVRFWKPEEPVSDIRKE 147 KWNF KFLV P+G+ V W P +S +R + Sbjct 21048813 KWNFEKFLVGPDGKAVMRWNPRVDMSTVRMD 21048721 Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust. Identities = 14/27 (52%), Positives = 18/27 (67%), Gaps = 0/27 (0%) Frame = -1 Query 63 LAFPCSQYGDTESGTSREIEAFAKSNY 89 L CS YGDT + SR+++ F KSNY Sbjct 2293435 LYLSCSMYGDTFATASRDMKLFFKSNY 2293355 > KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold10, whole genome shotgun sequence Length=26077971 Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 35/73 (48%), Gaps = 11/73 (15%) Frame = -1 Query 4 KDFYSYEVKDARGRTVSLEKYRGKVSLVVNVASGSELTEQSYRALQEL-----HRELGTS 58 K FY G +V +RG+V L+ NVAS T + + L +L HR + Sbjct 9655392 KTFYDLRATSLEGDSVDFNVFRGRVVLIENVASL*GTTARDFSELNQLQSKYPHRLV--- 9655222 Query 59 HFNVLAFPCSQYG 71 VL FPC+Q+G Sbjct 9655221 ---VLGFPCNQFG 9655192 Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 20/36 (56%), Gaps = 0/36 (0%) Frame = -2 Query 118 WNFWKFLVSPEGQVVRFWKPEEPVSDIRKEATTLVR 153 WNF KFL+ PEG+ + + P D+ + L+R Sbjct 9654788 WNFEKFLIGPEGEPFKRYSRNFPTIDVEPDIQRLLR 9654681 > KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, whole genome shotgun sequence Length=25629008 Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust. Identities = 28/76 (37%), Positives = 36/76 (47%), Gaps = 18/76 (24%) Frame = -2 Query 4 KDFYSYEVKDARGRTVSLEKYRGKVSLVVNVAS--GSELTEQSYRALQE--LHRELGT-- 57 K Y + + G V L Y+GKV L+VNVA+ GS + E LQE LH L Sbjct 17126302 KSIYDFSAETLEGEEVPLSIYKGKVLLIVNVATF*GSTIEE---VILQEH*LHNVLHIVP 17126132 Query 58 -----SHFNVLAFPCS 68 +H+ FPCS Sbjct 17126131 M*PY*NHY----FPCS 17126096 Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust. Identities = 12/32 (38%), Positives = 16/32 (50%), Gaps = 0/32 (0%) Frame = -1 Query 45 YRALQELHRELGTSHFNVLAFPCSQYGDTESG 76 Y + L G +F VL FPC+Q+G G Sbjct 17126090 YNRMNALMEMFGNLNFTVLGFPCNQFGLQSPG 17125995 Lambda K H a alpha 0.317 0.133 0.392 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 9917432868 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40