TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000622_2.0 # Protein # Glutathione peroxidase 4b (GPx4b) # Zebrafish Length=130 Score E Sequences producing significant alignments: (Bits) Value KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 70.9 4e-13 KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 60.5 1e-09 KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 54.3 1e-07 KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 52.4 5e-07 KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 50.4 2e-06 KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 37.0 0.037 KQ557220.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 31.6 2.8 > KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold23, whole genome shotgun sequence Length=30408201 Score = 70.9 bits (172), Expect = 4e-13, Method: Composition-based stats. Identities = 36/88 (41%), Positives = 50/88 (57%), Gaps = 1/88 (1%) Frame = +3 Query 1 FRGYVCIITNVASKXGKTPVNYTQLAAMHVTYAEKGLRILGFPCNQFGKQEPGSEAEIKE 60 R V ++ NVAS+ G T +Y L + + +L FPCNQFG+QEPGS+ +I Sbjct 25623396 LRTQVSLVVNVASECGFTDQHYRDLQQLQRDFGPFHFNVLAFPCNQFGQQEPGSDKDIDS 25623575 Query 61 FAKG-YNAEFDLFSKIDVNGDAAHPLWK 87 F + Y F LFSKI V G A+ ++K Sbjct 25623576 FVRTVYGVSFPLFSKIAVVGTGANNVYK 25623659 Score = 33.1 bits (74), Expect = 0.91, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 0/25 (0%) Frame = +2 Query 100 GNNIKWNFTKFLIDREGQVVKRYGP 124 G WNF KFLID +G+VV +GP Sbjct 25625108 GKEPDWNFWKFLIDVDGRVVDAWGP 25625182 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats. Identities = 30/84 (36%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Frame = +3 Query 7 IITNVASKXGKTPVNYTQLAAMHVTYAEKGLRILGFPCNQFGKQEPGSEAEIKEFAKG-Y 65 ++ NVAS T +Y L +H +L FPC QFG E G +I+ FAK Y Sbjct 24957954 LVVNVASHCQHTEASYKSLQELHRELGTSHFNVLAFPCGQFGDTERGLSRDIEAFAKSTY 24958133 Query 66 NAEFDLFSKIDVNGDAAHPLWKWM 89 F FSKI + G A P ++++ Sbjct 24958134 GVTFPFFSKIKILGTEAEPAFRFL 24958205 > KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold12, whole genome shotgun sequence Length=28566418 Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 0/50 (0%) Frame = +3 Query 1 FRGYVCIITNVASKXGKTPVNYTQLAAMHVTYAEKGLRILGFPCNQFGKQ 50 +G V ++ NVAS G T +YTQ+ +H ++ +GL ILG PCNQFG Q Sbjct 15207153 LKGKVVLVENVASL*GTTVRDYTQMNELHSRFSAEGLVILGVPCNQFGHQ 15207302 Score = 48.1 bits (113), Expect = 8e-06, Method: Composition-based stats. Identities = 28/76 (37%), Positives = 38/76 (50%), Gaps = 17/76 (22%) Frame = +3 Query 64 GYNAEFDLFSKIDVNGDAAHPLWKWMKEQ--------------PK---GRGTLGNNIKWN 106 G+ F L K+DVNG AHPL+ ++KE+ PK ++I WN Sbjct 15207726 GFEPNFQLLEKVDVNGSEAHPLFVYLKEKLPVPSDNAVSLMNDPKFIIWSPVCRSDISWN 15207905 Query 107 FTKFLIDREGQVVKRY 122 F KFLI +G+ KRY Sbjct 15207906 FEKFLIGADGEPYKRY 15207953 > KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold10, whole genome shotgun sequence Length=26077971 Score = 52.4 bits (124), Expect = 5e-07, Method: Composition-based stats. Identities = 26/58 (45%), Positives = 35/58 (60%), Gaps = 1/58 (2%) Frame = -1 Query 1 FRGYVCIITNVASKXGKTPVNYTQLAAMHVTYAEKGLRILGFPCNQFGKQEPGSEAEI 58 FRG V +I NVAS G T ++++L + Y + L +LGFPCNQFG Q SE + Sbjct 9655332 FRGRVVLIENVASL*GTTARDFSELNQLQSKYPHR-LVVLGFPCNQFGYQVSNSEVNL 9655162 Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats. Identities = 26/80 (33%), Positives = 35/80 (44%), Gaps = 25/80 (31%) Frame = -2 Query 64 GYNAEFDLFSKIDVNGDAAHPLWKWMKEQ---------------------PKGRGTLGNN 102 G+ F LF K DVNG HP++ ++K + P R + Sbjct 9654962 GFKPNFTLFEKCDVNGANTHPVFAYLKFKLPYPEDDPSSLMQDPRFLVWSPVSRA----D 9654795 Query 103 IKWNFTKFLIDREGQVVKRY 122 + WNF KFLI EG+ KRY Sbjct 9654794 VSWNFEKFLIGPEGEPFKRY 9654735 > KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold15, whole genome shotgun sequence Length=30170098 Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats. Identities = 22/36 (61%), Positives = 27/36 (75%), Gaps = 0/36 (0%) Frame = -3 Query 23 TQLAAMHVTYAEKGLRILGFPCNQFGKQEPGSEAEI 58 + L A+H GL ILGFPCNQFGKQEPG+++EI Sbjct 21050372 SALNALHEELKPLGLTILGFPCNQFGKQEPGTKSEI 21050265 Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust. Identities = 15/29 (52%), Positives = 20/29 (69%), Gaps = 0/29 (0%) Frame = -2 Query 101 NNIKWNFTKFLIDREGQVVKRYGPMDDPS 129 N+IKWNF KFL+ +G+ V R+ P D S Sbjct 21048822 NDIKWNFEKFLVGPDGKAVMRWNPRVDMS 21048736 > KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, whole genome shotgun sequence Length=25629008 Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats. Identities = 14/32 (44%), Positives = 19/32 (59%), Gaps = 0/32 (0%) Frame = -1 Query 22 YTQLAAMHVTYAEKGLRILGFPCNQFGKQEPG 53 Y ++ A+ + +LGFPCNQFG Q PG Sbjct 17126090 YNRMNALMEMFGNLNFTVLGFPCNQFGLQSPG 17125995 > KQ557220.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold19, whole genome shotgun sequence Length=31600912 Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats. Identities = 15/40 (38%), Positives = 23/40 (58%), Gaps = 4/40 (10%) Frame = -3 Query 3 GYVCIITNVASKXGKTPVNYTQLAAMHVTYAEKGLRILGF 42 G+ C +TNV +TP TQ++ +H G+RILG+ Sbjct 7897109 GFSCFVTNVT----QTPTWRTQVSGIHFILRLTGIRILGY 7897002 Lambda K H a alpha 0.319 0.138 0.434 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 5903237600 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40