TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000618_2.0 # Protein # Glutathione peroxidase 4a (GPx4a) # Zebrafish Length=113 Score E Sequences producing significant alignments: (Bits) Value KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 68.9 1e-12 KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 60.5 7e-10 KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 56.6 1e-08 KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 53.9 1e-07 KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 44.3 1e-04 KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 28.9 0.39 KQ557218.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 29.6 9.7 > KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold23, whole genome shotgun sequence Length=30408201 Score = 68.9 bits (167), Expect = 1e-12, Method: Composition-based stats. Identities = 35/90 (39%), Positives = 53/90 (59%), Gaps = 1/90 (1%) Frame = +3 Query 4 FRGKVVIITNVASKXGKTPVNYSQFAEMHAKYSERGLRILAFPSNQFGRQEPGTNSQIKE 63 R +V ++ NVAS+ G T +Y ++ + +LAFP NQFG+QEPG++ I Sbjct 25623396 LRTQVSLVVNVASECGFTDQHYRDLQQLQRDFGPFHFNVLAFPCNQFGQQEPGSDKDIDS 25623575 Query 64 FAKS-YNAEFDMFSKIDVNGDGAHPLWKWL 92 F ++ Y F +FSKI V G GA+ ++K L Sbjct 25623576 FVRTVYGVSFPLFSKIAVVGTGANNVYKHL 25623665 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 60.5 bits (145), Expect = 7e-10, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Frame = +3 Query 10 IITNVASKXGKTPVNYSQFAEMHAKYSERGLRILAFPSNQFGRQEPGTNSQIKEFAKS-Y 68 ++ NVAS T +Y E+H + +LAFP QFG E G + I+ FAKS Y Sbjct 24957954 LVVNVASHCQHTEASYKSLQELHRELGTSHFNVLAFPCGQFGDTERGLSRDIEAFAKSTY 24958133 Query 69 NAEFDMFSKIDVNGDGAHPLWKWL 92 F FSKI + G A P +++L Sbjct 24958134 GVTFPFFSKIKILGTEAEPAFRFL 24958205 > KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold12, whole genome shotgun sequence Length=28566418 Score = 56.6 bits (135), Expect = 1e-08, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 0/53 (0%) Frame = +3 Query 1 FTYFRGKVVIITNVASKXGKTPVNYSQFAEMHAKYSERGLRILAFPSNQFGRQ 53 + +GKVV++ NVAS G T +Y+Q E+H+++S GL IL P NQFG Q Sbjct 15207144 LSTLKGKVVLVENVASL*GTTVRDYTQMNELHSRFSAEGLVILGVPCNQFGHQ 15207302 Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%) Frame = +3 Query 48 NQFGRQEPGTNSQIKEFAK------SYNAEFDMFSKIDVNGDGAHPLWKWLKDQ 95 N + QE N +I K + F + K+DVNG AHPL+ +LK++ Sbjct 15207651 NVYA*QENTRNDEILRSLKYVRPGNGFEPNFQLLEKVDVNGSEAHPLFVYLKEK 15207812 > KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold10, whole genome shotgun sequence Length=26077971 Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats. Identities = 30/72 (42%), Positives = 43/72 (60%), Gaps = 3/72 (4%) Frame = -1 Query 1 FTYFRGKVVIITNVASKXGKTPVNYSQFAEMHAKYSERGLRILAFPSNQFGRQEPGTNSQ 60 F FRG+VV+I NVAS G T ++S+ ++ +KY R L +L FP NQFG Q +NS+ Sbjct 9655341 FNVFRGRVVLIENVASL*GTTARDFSELNQLQSKYPHR-LVVLGFPCNQFGYQV--SNSE 9655171 Query 61 IKEFAKSYNAEF 72 + F +F Sbjct 9655170 VNLFIHFLEGKF 9655135 Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust. Identities = 11/26 (42%), Positives = 16/26 (62%), Gaps = 0/26 (0%) Frame = -2 Query 68 YNAEFDMFSKIDVNGDGAHPLWKWLK 93 + F +F K DVNG HP++ +LK Sbjct 9654959 FKPNFTLFEKCDVNGANTHPVFAYLK 9654882 > KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold15, whole genome shotgun sequence Length=30170098 Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats. Identities = 19/36 (53%), Positives = 23/36 (64%), Gaps = 0/36 (0%) Frame = -3 Query 26 SQFAEMHAKYSERGLRILAFPSNQFGRQEPGTNSQI 61 S +H + GL IL FP NQFG+QEPGT S+I Sbjct 21050372 SALNALHEELKPLGLTILGFPCNQFGKQEPGTKSEI 21050265 > KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, whole genome shotgun sequence Length=25629008 Score = 28.9 bits (63), Expect(2) = 0.39, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (9%) Frame = -1 Query 25 YSQFAEMHA---KYSERGLRILAFPSNQFGRQEPG 56 +SQ+ M+A + +L FP NQFG Q PG Sbjct 17126099 FSQYNRMNALMEMFGNLNFTVLGFPCNQFGLQSPG 17125995 Score = 22.7 bits (47), Expect(2) = 0.39, Method: Composition-based stats. Identities = 9/21 (43%), Positives = 15/21 (71%), Gaps = 0/21 (0%) Frame = -2 Query 1 FTYFRGKVVIITNVASKXGKT 21 + ++GKV++I NVA+ G T Sbjct 17126251 LSIYKGKVLLIVNVATF*GST 17126189 > KQ557218.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold17, whole genome shotgun sequence Length=29603586 Score = 29.6 bits (65), Expect = 9.7, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 14/21 (67%), Gaps = 0/21 (0%) Frame = -3 Query 78 IDVNGDGAHPLWKWLKDQPNG 98 +DVNG HP+ KWLK+ N Sbjct 9286087 VDVNGLNCHPVSKWLKEHVNA 9286025 Lambda K H a alpha 0.318 0.136 0.423 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 5903248225 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40