TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000623_2.0 # Protein # Glutathione peroxidase 3b (GPx3b) # Zebrafish Length=178 Score E Sequences producing significant alignments: (Bits) Value KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 78.6 1e-27 KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 99.4 4e-22 KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 97.8 1e-21 KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 57.4 2e-08 KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 50.8 2e-06 KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 44.3 3e-04 > KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, whole genome shotgun sequence Length=25629008 Score = 78.6 bits (192), Expect(2) = 1e-27, Method: Compositional matrix adjust. Identities = 33/45 (73%), Positives = 39/45 (87%), Gaps = 0/45 (0%) Frame = -2 Query 117 KESLPFVNPVIGDIRKLYWSPIKANDVRWNFEKFLITADGRPYKR 161 + SLPFVNP+IGDI+K YWSPI ND+RWNFEKFLI +DG P+KR Sbjct 17124844 QNSLPFVNPLIGDIKKFYWSPICVNDIRWNFEKFLINSDGTPFKR 17124710 Score = 65.9 bits (159), Expect(2) = 1e-27, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 36/42 (86%), Gaps = 0/42 (0%) Frame = -3 Query 76 NHETLNVLQHVRPGSGFLPKFPIFSRIEVNGSDEDPLYAYLK 117 N E LNVL++VRPG GF+P FP+F++IEVNG +E+PL+ YLK Sbjct 17125056 NEEMLNVLKYVRPGGGFVPTFPVFAKIEVNGLNEEPLFTYLK 17124931 Score = 63.5 bits (153), Expect(2) = 4e-20, Method: Compositional matrix adjust. Identities = 27/35 (77%), Positives = 32/35 (91%), Gaps = 0/35 (0%) Frame = -1 Query 41 TQYHRMNALMDMYGGQRFTVLGFPCNQFGLQSPGE 75 +QY+RMNALM+M+G FTVLGFPCNQFGLQSPG+ Sbjct 17126096 SQYNRMNALMEMFGNLNFTVLGFPCNQFGLQSPGK 17125992 Score = 55.5 bits (132), Expect(2) = 4e-20, Method: Compositional matrix adjust. Identities = 27/41 (66%), Positives = 33/41 (80%), Gaps = 0/41 (0%) Frame = -2 Query 1 MAANSVYDFTVETLEEKSVSLDIFRGKVLLIMNVATFXGST 41 MA S+YDF+ ETLE + V L I++GKVLLI+NVATF GST Sbjct 17126311 MAYKSIYDFSAETLEGEEVPLSIYKGKVLLIVNVATF*GST 17126189 > KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold10, whole genome shotgun sequence Length=26077971 Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 54/120 (45%), Positives = 72/120 (60%), Gaps = 6/120 (5%) Frame = -2 Query 49 LMDMYGGQRFTVLGFPCNQFG--LQSPGENHETLNVLQHVRPGSGFLPKFPIFSRIEVNG 106 ++DMY F + FP LQ N E L+ LQHVRPG GF P F +F + +VNG Sbjct 9655094 IIDMYLYFPF*FITFPNINIACSLQENCTNGEILHSLQHVRPGGGFKPNFTLFEKCDVNG 9654915 Query 107 SDEDPLYAYLKESLPF----VNPVIGDIRKLYWSPIKANDVRWNFEKFLITADGRPYKRY 162 ++ P++AYLK LP+ + ++ D R L WSP+ DV WNFEKFLI +G P+KRY Sbjct 9654914 ANTHPVFAYLKFKLPYPEDDPSSLMQDPRFLVWSPVSRADVSWNFEKFLIGPEGEPFKRY 9654735 Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/103 (39%), Positives = 54/103 (52%), Gaps = 8/103 (8%) Frame = -1 Query 3 ANSVYDFTVETLEEKSVSLDIFRGKVLLIMNVATFXGST--QYHRMNALMDMYGGQRFTV 60 A + YD +LE SV ++FRG+V+LI NVA+ G+T + +N L Y R V Sbjct 9655395 AKTFYDLRATSLEGDSVDFNVFRGRVVLIENVASL*GTTARDFSELNQLQSKY-PHRLVV 9655219 Query 61 LGFPCNQFGLQSPGENHETLNVLQHVRPGSGFLPKFPIFSRIE 103 LGFPCNQFG Q ++ +N+ H G P SR E Sbjct 9655218 LGFPCNQFGYQV---SNSEVNLFIHFLEGK--FRHLPTASRKE 9655105 > KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold12, whole genome shotgun sequence Length=28566418 Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 72/118 (61%), Gaps = 11/118 (9%) Frame = +3 Query 56 QRFTV--LGFPC-----NQFGLQSPGENHETLNVLQHVRPGSGFLPKFPIFSRIEVNGSD 108 R++V + F C N + Q N E L L++VRPG+GF P F + +++VNGS+ Sbjct 15207600 NRYSVFSITFQCIYNYVNVYA*QENTRNDEILRSLKYVRPGNGFEPNFQLLEKVDVNGSE 15207779 Query 109 EDPLYAYLKESLPFVN----PVIGDIRKLYWSPIKANDVRWNFEKFLITADGRPYKRY 162 PL+ YLKE LP + ++ D + + WSP+ +D+ WNFEKFLI ADG PYKRY Sbjct 15207780 AHPLFVYLKEKLPVPSDNAVSLMNDPKFIIWSPVCRSDISWNFEKFLIGADGEPYKRY 15207953 Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats. Identities = 32/75 (43%), Positives = 43/75 (57%), Gaps = 4/75 (5%) Frame = +3 Query 1 MAAN--SVYDFTVETLEEKSVSLDIFRGKVLLIMNVATFXGST--QYHRMNALMDMYGGQ 56 MA N YD T + L +S SL +GKV+L+ NVA+ G+T Y +MN L + + Sbjct 15207078 MAGNIKRFYDLTAKLLSGESFSLSTLKGKVVLVENVASL*GTTVRDYTQMNELHSRFSAE 15207257 Query 57 RFTVLGFPCNQFGLQ 71 +LG PCNQFG Q Sbjct 15207258 GLVILGVPCNQFGHQ 15207302 > KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold23, whole genome shotgun sequence Length=30408201 Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/95 (36%), Positives = 52/95 (55%), Gaps = 7/95 (7%) Frame = +3 Query 24 FRGKVLLIMNVATFXGST--QYHRMNALMDMYGGQRFTVLGFPCNQFGLQSPGENHETLN 81 R +V L++NVA+ G T Y + L +G F VL FPCNQFG Q PG + + + Sbjct 25623396 LRTQVSLVVNVASECGFTDQHYRDLQQLQRDFGPFHFNVLAFPCNQFGQQEPGSDKDIDS 25623575 Query 82 VLQHVRPGSGFLPKFPIFSRIEVNGSDEDPLYAYL 116 ++ V + FP+FS+I V G+ + +Y +L Sbjct 25623576 FVRTV-----YGVSFPLFSKIAVVGTGANNVYKHL 25623665 Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust. Identities = 17/69 (25%), Positives = 33/69 (48%), Gaps = 0/69 (0%) Frame = +2 Query 100 SRIEVNGSDEDPLYAYLKESLPFVNPVIGDIRKLYWSPIKANDVRWNFEKFLITADGRPY 159 ++++++G + L Y + P V PV+ + SP+ + KFLI + + Sbjct 16421093 TKLQISGLCLESLSQYFHKIFPPVPPVVCLLLPDATSPVLQLSWCYAASKFLIFSPSKCN 16421272 Query 160 KRYYCETDM 168 YYC+ D+ Sbjct 16421273 DGYYCQADL 16421299 > KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold15, whole genome shotgun sequence Length=30170098 Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 34/116 (29%) Frame = -3 Query 3 ANSVYDFTVETLE-EKSVSLDIFRGKVLLIMNVATFXGST------QYHR---------- 45 A ++Y + TL ++V+ F GK +L +NVAT+ G T Q H Sbjct 21050597 AGTIYQYNARTLNGSRAVNFGDFAGKTVLFVNVATY*GLTFQYVGKQLHTVGFVT*ALLH 21050418 Query 46 -----------------MNALMDMYGGQRFTVLGFPCNQFGLQSPGENHETLNVLQ 84 +NAL + T+LGFPCNQFG Q PG E L+ L+ Sbjct 21050417 SSLKFFWFVCSWRFLSALNALHEELKPLGLTILGFPCNQFGKQEPGTKSEILSGLK 21050250 Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 21/48 (44%), Positives = 31/48 (65%), Gaps = 1/48 (2%) Frame = -2 Query 132 KLYWSPIKANDVRWNFEKFLITADGRPYKRYYCETDMQH-KTNIELYL 178 +L+W P+K ND++WNFEKFL+ DG+ R+ DM + +I YL Sbjct 21048849 RLFWEPLKINDIKWNFEKFLVGPDGKAVMRWNPRVDMSTVRMDIRNYL 21048706 Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 0/39 (0%) Frame = -3 Query 84 QHVRPGSGFLPKFPIFSRIEVNGSDEDPLYAYLKESLPF 122 ++VRPG+GF+P F + + +VNG +E ++ +LK S F Sbjct 21049739 RYVRPGNGFVPNFLLMEKGDVNGKNEQRVFTFLKVSSRF 21049623 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 7/89 (8%) Frame = +3 Query 30 LIMNVATFXGSTQ--YHRMNALMDMYGGQRFTVLGFPCNQFGLQSPGENHETLNVLQHVR 87 L++NVA+ T+ Y + L G F VL FPC QFG G + + + Sbjct 24957954 LVVNVASHCQHTEASYKSLQELHRELGTSHFNVLAFPCGQFGDTERGLSRDIEAFAK--- 24958124 Query 88 PGSGFLPKFPIFSRIEVNGSDEDPLYAYL 116 S + FP FS+I++ G++ +P + +L Sbjct 24958125 --STYGVTFPFFSKIKILGTEAEPAFRFL 24958205 Lambda K H a alpha 0.322 0.140 0.429 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 15112273856 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40