TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000617_2.0 # Protein # Glutathione peroxidase 3a (GPx3a) # Zebrafish Length=222 Score E Sequences producing significant alignments: (Bits) Value KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 110 2e-25 KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 96.7 7e-21 KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 87.4 9e-18 KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 58.2 1e-15 KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 56.2 8e-08 KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 44.3 7e-04 > KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold15, whole genome shotgun sequence Length=30170098 Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 60/132 (45%), Positives = 75/132 (57%), Gaps = 32/132 (24%) Frame = -3 Query 19 HKIAALSNTQACNSAAGDSFHNYGAKTINGTQFIPFSHYAGKHVLVVNVATYXGLTFQYV 78 H + + TQ C+S+ + + Y A+T+NG++ + F +AGK VL VNVATY GLTFQYV Sbjct 21050645 HSLTSCLYTQRCDSSTAGTIYQYNARTLNGSRAVNFGDFAGKTVLFVNVATY*GLTFQYV 21050466 Query 79 --------------------------------ELNALHEELRHLGFTILGFPCDQFGKQE 106 LNALHEEL+ LG TILGFPC+QFGKQE Sbjct 21050465 GKQLHTVGFVT*ALLHSSLKFFWFVCSWRFLSALNALHEELKPLGLTILGFPCNQFGKQE 21050286 Query 107 PGENNEILSALK 118 PG +EILS LK Sbjct 21050285 PGTKSEILSGLK 21050250 Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 44/68 (65%), Positives = 55/68 (81%), Gaps = 0/68 (0%) Frame = -2 Query 150 LKNACPPVGESFGATSNRLFWEPLKVNDIKWNFEKFLLDPDGRPVMRWFPRVNVSEVRAD 209 ++++CPPVG+ FGA RLFWEPLK+NDIKWNFEKFL+ PDG+ VMRW PRV++S VR D Sbjct 21048900 VQSSCPPVGDDFGAPYGRLFWEPLKINDIKWNFEKFLVGPDGKAVMRWNPRVDMSTVRMD 21048721 Query 210 ILKYFHQL 217 I Y +L Sbjct 21048720 IRNYLLRL 21048697 Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 27/34 (79%), Positives = 29/34 (85%), Gaps = 0/34 (0%) Frame = -3 Query 118 KYVRPGNGFVPNFQLFEKGDVNGDGEQALFTFLK 151 +YVRPGNGFVPNF L EKGDVNG EQ +FTFLK Sbjct 21049739 RYVRPGNGFVPNFLLMEKGDVNGKNEQRVFTFLK 21049638 > KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold12, whole genome shotgun sequence Length=28566418 Score = 96.7 bits (239), Expect = 7e-21, Method: Composition-based stats. Identities = 50/109 (46%), Positives = 63/109 (58%), Gaps = 3/109 (3%) Frame = +3 Query 105 QEPGENNEILSALKYVRPGNGFVPNFQLFEKGDVNGDGEQALFTFLKNACPPVGESFGAT 164 QE N+EIL +LKYVRPGNGF PNFQL EK DVNG LF +LK P ++ + Sbjct 15207666 QENTRNDEILRSLKYVRPGNGFEPNFQLLEKVDVNGSEAHPLFVYLKEKLPVPSDNAVSL 15207845 Query 165 SNR---LFWEPLKVNDIKWNFEKFLLDPDGRPVMRWFPRVNVSEVRADI 210 N + W P+ +DI WNFEKFL+ DG P R+ ++ DI Sbjct 15207846 MNDPKFIIWSPVCRSDISWNFEKFLIGADGEPYKRYSRNFLTIDLEGDI 15207992 Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 39/69 (57%), Gaps = 2/69 (3%) Frame = +3 Query 38 FHNYGAKTINGTQFIPFSHYAGKHVLVVNVATYXGLTFQ-YVELNALHEELRHLGFTILG 96 F++ AK ++G F S GK VLV NVA+ G T + Y ++N LH G ILG Sbjct 15207099 FYDLTAKLLSGESF-SLSTLKGKVVLVENVASL*GTTVRDYTQMNELHSRFSAEGLVILG 15207275 Query 97 FPCDQFGKQ 105 PC+QFG Q Sbjct 15207276 VPCNQFGHQ 15207302 > KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold10, whole genome shotgun sequence Length=26077971 Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/147 (39%), Positives = 76/147 (52%), Gaps = 10/147 (7%) Frame = -2 Query 76 QYVELNALH--EELRHLGFTILGFPCDQFGK--QEPGENNEILSALKYVRPGNGFVPNFQ 131 Q VE N+ H + + F + FP QE N EIL +L++VRPG GF PNF Sbjct 9655121 QLVEKNSQHIIDMYLYFPF*FITFPNINIACSLQENCTNGEILHSLQHVRPGGGFKPNFT 9654942 Query 132 LFEKGDVNGDGEQALFTFLKNACP-PVGE--SFGATSNRLFWEPLKVNDIKWNFEKFLLD 188 LFEK DVNG +F +LK P P + S L W P+ D+ WNFEKFL+ Sbjct 9654941 LFEKCDVNGANTHPVFAYLKFKLPYPEDDPSSLMQDPRFLVWSPVSRADVSWNFEKFLIG 9654762 Query 189 PDGRPVMRW---FPRVNVSEVRADILK 212 P+G P R+ FP ++V +L+ Sbjct 9654761 PEGEPFKRYSRNFPTIDVEPDIQRLLR 9654681 Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Frame = -1 Query 37 SFHNYGAKTINGTQFIPFSHYAGKHVLVVNVATYXGLTFQ-YVELNALHEELRHLGFTIL 95 +F++ A ++ G + F+ + G+ VL+ NVA+ G T + + ELN L + H +L Sbjct 9655389 TFYDLRATSLEGDS-VDFNVFRGRVVLIENVASL*GTTARDFSELNQLQSKYPH-RLVVL 9655216 Query 96 GFPCDQFGKQ 105 GFPC+QFG Q Sbjct 9655215 GFPCNQFGYQ 9655186 > KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, whole genome shotgun sequence Length=25629008 Score = 58.2 bits (139), Expect(2) = 1e-15, Method: Compositional matrix adjust. Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 0/45 (0%) Frame = -3 Query 110 NNEILSALKYVRPGNGFVPNFQLFEKGDVNGDGEQALFTFLKNAC 154 N E+L+ LKYVRPG GFVP F +F K +VNG E+ LFT+LK C Sbjct 17125056 NEEMLNVLKYVRPGGGFVPTFPVFAKIEVNGLNEEPLFTYLKVYC 17124922 Score = 45.8 bits (107), Expect(2) = 1e-15, Method: Compositional matrix adjust. Identities = 21/46 (46%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Frame = -2 Query 151 KNACPPVGESFGATSNRLFWEPLKVNDIKWNFEKFLLDPDGRPVMR 196 +N+ P V G + +W P+ VNDI+WNFEKFL++ DG P R Sbjct 17124844 QNSLPFVNPLIGDIK-KFYWSPICVNDIRWNFEKFLINSDGTPFKR 17124710 Score = 47.0 bits (110), Expect(2) = 8e-10, Method: Compositional matrix adjust. Identities = 20/34 (59%), Positives = 25/34 (74%), Gaps = 0/34 (0%) Frame = -1 Query 76 QYVELNALHEELRHLGFTILGFPCDQFGKQEPGE 109 QY +NAL E +L FT+LGFPC+QFG Q PG+ Sbjct 17126093 QYNRMNALMEMFGNLNFTVLGFPCNQFGLQSPGK 17125992 Score = 37.4 bits (85), Expect(2) = 8e-10, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (60%), Gaps = 7/57 (12%) Frame = -2 Query 34 AGDSFHNYGAKTINGTQFIPFSHYAGKHVLVVNVATYXGLTFQYVEL------NALH 84 A S +++ A+T+ G + +P S Y GK +L+VNVAT+ G T + V L N LH Sbjct 17126308 AYKSIYDFSAETLEGEE-VPLSIYKGKVLLIVNVATF*GSTIEEVILQEH*LHNVLH 17126141 > KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold23, whole genome shotgun sequence Length=30408201 Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 6/89 (7%) Frame = +3 Query 63 LVVNVATYXGLTFQ-YVELNALHEELRHLGFTILGFPCDQFGKQEPGENNEILSALKYVR 121 LVVNVA+ G T Q Y +L L + F +L FPC+QFG+QEPG + +I S ++ V Sbjct 25623414 LVVNVASECGFTDQHYRDLQQLQRDFGPFHFNVLAFPCNQFGQQEPGSDKDIDSFVRTV- 25623590 Query 122 PGNGFVPNFQLFEKGDVNGDGEQALFTFL 150 + +F LF K V G G ++ L Sbjct 25623591 ----YGVSFPLFSKIAVVGTGANNVYKHL 25623665 Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/39 (49%), Positives = 25/39 (64%), Gaps = 0/39 (0%) Frame = +2 Query 180 WNFEKFLLDPDGRPVMRWFPRVNVSEVRADILKYFHQLL 218 WNF KFL+D DGR V W P+V V+E+R I Q++ Sbjct 25625123 WNFWKFLIDVDGRVVDAWGPKVPVTEIRPKIADMVRQII 25625239 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/89 (36%), Positives = 42/89 (47%), Gaps = 6/89 (7%) Frame = +3 Query 63 LVVNVATYXGLT-FQYVELNALHEELRHLGFTILGFPCDQFGKQEPGENNEILSALKYVR 121 LVVNVA++ T Y L LH EL F +L FPC QFG E G + +I + K Sbjct 24957954 LVVNVASHCQHTEASYKSLQELHRELGTSHFNVLAFPCGQFGDTERGLSRDIEAFAK--- 24958124 Query 122 PGNGFVPNFQLFEKGDVNGDGEQALFTFL 150 + + F F K + G + F FL Sbjct 24958125 --STYGVTFPFFSKIKILGTEAEPAFRFL 24958205 Score = 35.0 bits (79), Expect = 0.83, Method: Compositional matrix adjust. Identities = 33/120 (28%), Positives = 50/120 (42%), Gaps = 6/120 (5%) Frame = -2 Query 105 QEPGENNEILSALKYVRPGNGFVPNFQLFEKGDVNGDGEQALFTFLKNACPPVGESFGAT 164 + PG+ E +S ++ + F NF LF ++G +Q LF ++A GE G T Sbjct 29632731 KSPGKEPEDVSEVQSLSLEEEF*LNFILFSLLSLSGATKQHLFACYRHATCLQGEPSGKT 29632552 Query 165 SNR--LFWEPLKVNDIKWNFEKFLLD----PDGRPVMRWFPRVNVSEVRADILKYFHQLL 218 S+ W K F+L + + F R S V+ D+L HQLL Sbjct 29632551 SDPHPSLWAERKDISTSDKESGFILQVLEIRESQKKHNDFKRYGCSTVKCDVLIVQHQLL 29632372 Lambda K H a alpha 0.321 0.138 0.433 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 24793566420 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40