TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000616_2.0 # Protein # Glutathione peroxidase 2 (GPx2) # Zebrafish Length=189 Score E Sequences producing significant alignments: (Bits) Value KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 167 3e-45 KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 139 7e-36 KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 60.1 3e-09 KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 45.1 1e-07 KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 48.5 2e-05 KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 37.4 0.097 > KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold10, whole genome shotgun sequence Length=26077971 Score = 167 bits (422), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 85/116 (73%), Positives = 108/116 (93%), Gaps = 0/116 (0%) Frame = -2 Query 74 QENCSDGEILNSLKYVRPGEGYKPSFTIFQKCVVNGSDAHPVFSylkdklpypdddpVTL 133 QENC++GEIL+SL++VRPG G+KP+FT+F+KC VNG++ HPVF+YLK KLPYP+DDP +L Sbjct 9655022 QENCTNGEILHSLQHVRPGGGFKPNFTLFEKCDVNGANTHPVFAYLKFKLPYPEDDPSSL 9654843 Query 134 IQDPKYLVWNPVSRNDISWNFEKFLIGPEGEPFKRYSKKFQTINIEPDIQRLLKLT 189 +QDP++LVW+PVSR D+SWNFEKFLIGPEGEPFKRYS+ F TI++EPDIQRLL+LT Sbjct 9654842 MQDPRFLVWSPVSRADVSWNFEKFLIGPEGEPFKRYSRNFPTIDVEPDIQRLLRLT 9654675 Score = 136 bits (342), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 61/79 (77%), Positives = 74/79 (94%), Gaps = 0/79 (0%) Frame = -1 Query 1 MTFIAKTFYDLHATTLEGDTIDFNIYRGRVVLIENVASLXGTTTQDYTQLNELQSRYPHR 60 MTFIAKTFYDL AT+LEGD++DFN++RGRVVLIENVASL GTT +D+++LN+LQS+YPHR Sbjct 9655407 MTFIAKTFYDLRATSLEGDSVDFNVFRGRVVLIENVASL*GTTARDFSELNQLQSKYPHR 9655228 Query 61 LVVLGFPCNQFGYQENCSD 79 LVVLGFPCNQFGYQ + S+ Sbjct 9655227 LVVLGFPCNQFGYQVSNSE 9655171 > KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold12, whole genome shotgun sequence Length=28566418 Score = 139 bits (351), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 77/139 (55%), Positives = 104/139 (75%), Gaps = 7/139 (5%) Frame = +3 Query 54 QSRYPHRLVVLGFPC-----NQFGYQENCSDGEILNSLKYVRPGEGYKPSFTIFQKCVVN 108 Q+RY + + F C N + QEN + EIL SLKYVRPG G++P+F + +K VN Sbjct 15207597 QNRY--SVFSITFQCIYNYVNVYA*QENTRNDEILRSLKYVRPGNGFEPNFQLLEKVDVN 15207770 Query 109 GSDAHPVFSylkdklpypdddpVTLIQDPKYLVWNPVSRNDISWNFEKFLIGPEGEPFKR 168 GS+AHP+F YLK+KLP P D+ V+L+ DPK+++W+PV R+DISWNFEKFLIG +GEP+KR Sbjct 15207771 GSEAHPLFVYLKEKLPVPSDNAVSLMNDPKFIIWSPVCRSDISWNFEKFLIGADGEPYKR 15207950 Query 169 YSKKFQTINIEPDIQRLLK 187 YS+ F TI++E DI+ LLK Sbjct 15207951 YSRNFLTIDLEGDIKELLK 15208007 Score = 88.2 bits (217), Expect = 2e-18, Method: Composition-based stats. Identities = 41/70 (59%), Positives = 52/70 (74%), Gaps = 1/70 (1%) Frame = +3 Query 6 KTFYDLHATTLEGDTIDFNIYRGRVVLIENVASLXGTTTQDYTQLNELQSRYPHR-LVVL 64 K FYDL A L G++ + +G+VVL+ENVASL GTT +DYTQ+NEL SR+ LV+L Sbjct 15207093 KRFYDLTAKLLSGESFSLSTLKGKVVLVENVASL*GTTVRDYTQMNELHSRFSAEGLVIL 15207272 Query 65 GFPCNQFGYQ 74 G PCNQFG+Q Sbjct 15207273 GVPCNQFGHQ 15207302 > KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold23, whole genome shotgun sequence Length=30408201 Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/91 (43%), Positives = 51/91 (56%), Gaps = 6/91 (7%) Frame = +3 Query 27 RGRVVLIENVASLXGTTTQDYTQLNELQSRY-PHRLVVLGFPCNQFGYQENCSDGEILNS 85 R +V L+ NVAS G T Q Y L +LQ + P VL FPCNQFG QE SD +I + Sbjct 25623399 RTQVSLVVNVASECGFTDQHYRDLQQLQRDFGPFHFNVLAFPCNQFGQQEPGSDKDIDSF 25623578 Query 86 LKYVRPGEGYKPSFTIFQKCVVNGSDAHPVF 116 ++ V Y SF +F K V G+ A+ V+ Sbjct 25623579 VRTV-----YGVSFPLFSKIAVVGTGANNVY 25623656 > KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, whole genome shotgun sequence Length=25629008 Score = 45.1 bits (105), Expect(2) = 1e-07, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 30/41 (73%), Gaps = 0/41 (0%) Frame = -2 Query 6 KTFYDLHATTLEGDTIDFNIYRGRVVLIENVASLXGTTTQD 46 K+ YD A TLEG+ + +IY+G+V+LI NVA+ G+T ++ Sbjct 17126302 KSIYDFSAETLEGEEVPLSIYKGKVLLIVNVATF*GSTIEE 17126180 Score = 31.6 bits (70), Expect(2) = 1e-07, Method: Compositional matrix adjust. Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Frame = -1 Query 46 DYTQLNELQSRYPH-RLVVLGFPCNQFGYQE 75 Y ++N L + + VLGFPCNQFG Q Sbjct 17126093 QYNRMNALMEMFGNLNFTVLGFPCNQFGLQS 17126001 Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 22/36 (61%), Positives = 25/36 (69%), Gaps = 0/36 (0%) Frame = -2 Query 133 LIQDPKYLVWNPVSRNDISWNFEKFLIGPEGEPFKR 168 LI D K W+P+ NDI WNFEKFLI +G PFKR Sbjct 17124817 LIGDIKKFYWSPICVNDIRWNFEKFLINSDGTPFKR 17124710 Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 27/37 (73%), Gaps = 0/37 (0%) Frame = -3 Query 81 EILNSLKYVRPGEGYKPSFTIFQKCVVNGSDAHPVFS 117 E+LN LKYVRPG G+ P+F +F K VNG + P+F+ Sbjct 17125050 EMLNVLKYVRPGGGFVPTFPVFAKIEVNGLNEEPLFT 17124940 > KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold15, whole genome shotgun sequence Length=30170098 Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats. Identities = 38/116 (33%), Positives = 48/116 (41%), Gaps = 33/116 (28%) Frame = -3 Query 5 AKTFYDLHATTLEGD-TIDFNIYRGRVVLIENVASLXGTTTQD----------------- 46 A T Y +A TL G ++F + G+ VL NVA+ G T Q Sbjct 21050597 AGTIYQYNARTLNGSRAVNFGDFAGKTVLFVNVATY*GLTFQYVGKQLHTVGFVT*ALLH 21050418 Query 47 --------------YTQLNELQSRY-PHRLVVLGFPCNQFGYQENCSDGEILNSLK 87 + LN L P L +LGFPCNQFG QE + EIL+ LK Sbjct 21050417 SSLKFFWFVCSWRFLSALNALHEELKPLGLTILGFPCNQFGKQEPGTKSEILSGLK 21050250 Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 20/47 (43%), Positives = 29/47 (62%), Gaps = 0/47 (0%) Frame = -2 Query 140 LVWNPVSRNDISWNFEKFLIGPEGEPFKRYSKKFQTINIEPDIQRLL 186 L W P+ NDI WNFEKFL+GP+G+ R++ + + DI+ L Sbjct 21048846 LFWEPLKINDIKWNFEKFLVGPDGKAVMRWNPRVDMSTVRMDIRNYL 21048706 Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust. Identities = 14/31 (45%), Positives = 21/31 (68%), Gaps = 0/31 (0%) Frame = -3 Query 87 KYVRPGEGYKPSFTIFQKCVVNGSDAHPVFS 117 +YVRPG G+ P+F + +K VNG + VF+ Sbjct 21049739 RYVRPGNGFVPNFLLMEKGDVNGKNEQRVFT 21049647 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 37.4 bits (85), Expect = 0.097, Method: Compositional matrix adjust. Identities = 29/86 (34%), Positives = 35/86 (41%), Gaps = 6/86 (7%) Frame = +3 Query 32 LIENVASLXGTTTQDYTQLNELQSRY-PHRLVVLGFPCNQFGYQENCSDGEILNSLKYVR 90 L+ NVAS T Y L EL VL FPC QFG E +I K Sbjct 24957954 LVVNVASHCQHTEASYKSLQELHRELGTSHFNVLAFPCGQFGDTERGLSRDIEAFAK--- 24958124 Query 91 PGEGYKPSFTIFQKCVVNGSDAHPVF 116 Y +F F K + G++A P F Sbjct 24958125 --STYGVTFPFFSKIKILGTEAEPAF 24958196 Lambda K H a alpha 0.321 0.140 0.428 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 17473564796 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40