TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000624_2.0 # Protein # Glutathione peroxidase 1b (GPx1b) # Zebrafish Length=191 Score E Sequences producing significant alignments: (Bits) Value KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 202 1e-57 KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 176 3e-48 KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 57.0 1e-18 KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 50.4 4e-06 KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 46.6 8e-05 KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 42.0 0.003 > KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold12, whole genome shotgun sequence Length=28566418 Score = 202 bits (515), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 94/123 (76%), Positives = 107/123 (87%), Gaps = 0/123 (0%) Frame = +3 Query 69 CNQFGHQENCKNEEILQSLKYVRPGNGFEPKFQILEKLEVNGENAHPLFAFLKEKLPQPS 128 N + QEN +N+EIL+SLKYVRPGNGFEP FQ+LEK++VNG AHPLF +LKEKLP PS Sbjct 15207648 VNVYA*QENTRNDEILRSLKYVRPGNGFEPNFQLLEKVDVNGSEAHPLFVYLKEKLPVPS 15207827 Query 129 DDPVSLMGDPKFIIWSPVCRNDISWNFEKFLIGPDGEPFKRYSRRFLTIDIDADIKELLK 188 D+ VSLM DPKFIIWSPVCR+DISWNFEKFLIG DGEP+KRYSR FLTID++ DIKELLK Sbjct 15207828 DNAVSLMNDPKFIIWSPVCRSDISWNFEKFLIGADGEPYKRYSRNFLTIDLEGDIKELLK 15208007 Query 189 RTK 191 R K Sbjct 15208008 RIK 15208016 Score = 128 bits (322), Expect = 5e-32, Method: Composition-based stats. Identities = 57/75 (76%), Positives = 68/75 (91%), Gaps = 0/75 (0%) Frame = +3 Query 1 MAGTMKKFYDLSAKLLSGDLLNFSSLKGKVVLIENVASLXGTTVRDYTQMNELHSRYADQ 60 MAG +K+FYDL+AKLLSG+ + S+LKGKVVL+ENVASL GTTVRDYTQMNELHSR++ + Sbjct 15207078 MAGNIKRFYDLTAKLLSGESFSLSTLKGKVVLVENVASL*GTTVRDYTQMNELHSRFSAE 15207257 Query 61 GLVVLGAPCNQFGHQ 75 GLV+LG PCNQFGHQ Sbjct 15207258 GLVILGVPCNQFGHQ 15207302 > KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold10, whole genome shotgun sequence Length=26077971 Score = 176 bits (445), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 79/117 (68%), Positives = 95/117 (81%), Gaps = 0/117 (0%) Frame = -2 Query 75 QENCKNEEILQSLKYVRPGNGFEPKFQILEKLEVNGENAHPLFAFLKEKLPQPSDDPVSL 134 QENC N EIL SL++VRPG GF+P F + EK +VNG N HP+FA+LK KLP P DDP SL Sbjct 9655022 QENCTNGEILHSLQHVRPGGGFKPNFTLFEKCDVNGANTHPVFAYLKFKLPYPEDDPSSL 9654843 Query 135 MGDPKFIIWSPVCRNDISWNFEKFLIGPDGEPFKRYSRRFLTIDIDADIKELLKRTK 191 M DP+F++WSPV R D+SWNFEKFLIGP+GEPFKRYSR F TID++ DI+ LL+ TK Sbjct 9654842 MQDPRFLVWSPVSRADVSWNFEKFLIGPEGEPFKRYSRNFPTIDVEPDIQRLLRLTK 9654672 Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 45/83 (54%), Positives = 59/83 (71%), Gaps = 3/83 (4%) Frame = -1 Query 1 MAGTMKKFYDLSAKLLSGDLLNFSSLKGKVVLIENVASLXGTTVRDYTQMNELHSRYADQ 60 M K FYDL A L GD ++F+ +G+VVLIENVASL GTT RD++++N+L S+Y + Sbjct 9655407 MTFIAKTFYDLRATSLEGDSVDFNVFRGRVVLIENVASL*GTTARDFSELNQLQSKYPHR 9655228 Query 61 GLVVLGAPCNQFGHQENCKNEEI 83 LVVLG PCNQFG+Q N E+ Sbjct 9655227 -LVVLGFPCNQFGYQ--VSNSEV 9655168 > KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, whole genome shotgun sequence Length=25629008 Score = 57.0 bits (136), Expect(2) = 1e-18, Method: Compositional matrix adjust. Identities = 26/42 (62%), Positives = 30/42 (71%), Gaps = 0/42 (0%) Frame = -3 Query 80 NEEILQSLKYVRPGNGFEPKFQILEKLEVNGENAHPLFAFLK 121 NEE+L LKYVRPG GF P F + K+EVNG N PLF +LK Sbjct 17125056 NEEMLNVLKYVRPGGGFVPTFPVFAKIEVNGLNEEPLFTYLK 17124931 Score = 56.6 bits (135), Expect(2) = 1e-18, Method: Compositional matrix adjust. Identities = 25/36 (69%), Positives = 27/36 (75%), Gaps = 0/36 (0%) Frame = -2 Query 134 LMGDPKFIIWSPVCRNDISWNFEKFLIGPDGEPFKR 169 L+GD K WSP+C NDI WNFEKFLI DG PFKR Sbjct 17124817 LIGDIKKFYWSPICVNDIRWNFEKFLINSDGTPFKR 17124710 Score = 38.5 bits (88), Expect(2) = 1e-06, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 27/41 (66%), Gaps = 0/41 (0%) Frame = -2 Query 6 KKFYDLSAKLLSGDLLNFSSLKGKVVLIENVASLXGTTVRD 46 K YD SA+ L G+ + S KGKV+LI NVA+ G+T+ + Sbjct 17126302 KSIYDFSAETLEGEEVPLSIYKGKVLLIVNVATF*GSTIEE 17126180 Score = 34.3 bits (77), Expect(2) = 1e-06, Method: Compositional matrix adjust. Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 0/35 (0%) Frame = -1 Query 42 TTVRDYTQMNELHSRYADQGLVVLGAPCNQFGHQE 76 + Y +MN L + + VLG PCNQFG Q Sbjct 17126105 SMFSQYNRMNALMEMFGNLNFTVLGFPCNQFGLQS 17126001 > KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold15, whole genome shotgun sequence Length=30170098 Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 46/119 (39%), Gaps = 32/119 (27%) Frame = -3 Query 2 AGTMKKFYDLSAKLLSGD-LLNFSSLKGKVVLIENVASLXGTTV---------------- 44 + T Y +A+ L+G +NF GK VL NVA+ G T Sbjct 21050606 SSTAGTIYQYNARTLNGSRAVNFGDFAGKTVLFVNVATY*GLTFQYVGKQLHTVGFVT*A 21050427 Query 45 ---------------RDYTQMNELHSRYADQGLVVLGAPCNQFGHQENCKNEEILQSLK 88 R + +N LH GL +LG PCNQFG QE EIL LK Sbjct 21050426 LLHSSLKFFWFVCSWRFLSALNALHEELKPLGLTILGFPCNQFGKQEPGTKSEILSGLK 21050250 Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/49 (45%), Positives = 30/49 (61%), Gaps = 0/49 (0%) Frame = -2 Query 141 IIWSPVCRNDISWNFEKFLIGPDGEPFKRYSRRFLTIDIDADIKELLKR 189 + W P+ NDI WNFEKFL+GPDG+ R++ R + DI+ L R Sbjct 21048846 LFWEPLKINDIKWNFEKFLVGPDGKAVMRWNPRVDMSTVRMDIRNYLLR 21048700 Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 20/34 (59%), Positives = 26/34 (76%), Gaps = 0/34 (0%) Frame = -3 Query 88 KYVRPGNGFEPKFQILEKLEVNGENAHPLFAFLK 121 +YVRPGNGF P F ++EK +VNG+N +F FLK Sbjct 21049739 RYVRPGNGFVPNFLLMEKGDVNGKNEQRVFTFLK 21049638 > KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold23, whole genome shotgun sequence Length=30408201 Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 5/96 (5%) Frame = +3 Query 25 SLKGKVVLIENVASLXGTTVRDYTQMNELHSRYADQGLVVLGAPCNQFGHQENCKNEEIL 84 SL+ +V L+ NVAS G T + Y + +L + VL PCNQFG QE +++I Sbjct 25623393 SLRTQVSLVVNVASECGFTDQHYRDLQQLQRDFGPFHFNVLAFPCNQFGQQEPGSDKDID 25623572 Query 85 QSLKYVRPGNGFEPKFQILEKLEVNGENAHPLFAFL 120 ++ V + F + K+ V G A+ ++ L Sbjct 25623573 SFVRTV-----YGVSFPLFSKIAVVGTGANNVYKHL 25623665 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Frame = +3 Query 32 LIENVASLXGTTVRDYTQMNELHSRYADQGLVVLGAPCNQFGHQENCKNEEILQSLKYVR 91 L+ NVAS T Y + ELH VL PC QFG E + +I K Sbjct 24957954 LVVNVASHCQHTEASYKSLQELHRELGTSHFNVLAFPCGQFGDTERGLSRDIEAFAK--- 24958124 Query 92 PGNGFEPKFQILEKLEVNGENAHPLFAFLKEK 123 + + F K+++ G A P F FL + Sbjct 24958125 --STYGVTFPFFSKIKILGTEAEPAFRFLTGR 24958214 Lambda K H a alpha 0.319 0.139 0.416 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 17945823304 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40