TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000621_2.0 # Protein # Glutathione peroxidase 1a (GPx1a) # Zebrafish Length=190 Score E Sequences producing significant alignments: (Bits) Value KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 185 1e-51 KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 159 1e-42 KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 58.2 3e-18 KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 53.5 4e-07 KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 51.2 2e-06 KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 45.4 2e-04 KQ557222.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 32.0 5.6 KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 31.2 9.1 > KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold12, whole genome shotgun sequence Length=28566418 Score = 185 bits (470), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 86/119 (72%), Positives = 99/119 (83%), Gaps = 0/119 (0%) Frame = +3 Query 68 CNQFGYQENCTNEEILLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLKEKLPFPS 127 N + QEN N+EIL SLKYVRPGNG+EP FQLLEKVDVNG AHPLF +LKEKLP PS Sbjct 15207648 VNVYA*QENTRNDEILRSLKYVRPGNGFEPNFQLLEKVDVNGSEAHPLFVYLKEKLPVPS 15207827 Query 128 DEPMPFMSDPKFIIWSPVCRNDIAWNFEKFLIGSDGVPFKRYSRRFLTSGIDGDIKKLL 186 D + M+DPKFIIWSPVCR+DI+WNFEKFLIG+DG P+KRYSR FLT ++GDIK+LL Sbjct 15207828 DNAVSLMNDPKFIIWSPVCRSDISWNFEKFLIGADGEPYKRYSRNFLTIDLEGDIKELL 15208004 Score = 120 bits (301), Expect = 3e-29, Method: Composition-based stats. Identities = 56/75 (75%), Positives = 65/75 (87%), Gaps = 1/75 (1%) Frame = +3 Query 1 MAG-IKSFYDITAKTLTGEEFKFSSLQGKVVLIENVASLXGTTSRDYTQMNELHERFAEK 59 MAG IK FYD+TAK L+GE F S+L+GKVVL+ENVASL GTT RDYTQMNELH RF+ + Sbjct 15207078 MAGNIKRFYDLTAKLLSGESFSLSTLKGKVVLVENVASL*GTTVRDYTQMNELHSRFSAE 15207257 Query 60 GLVVLGVPCNQFGYQ 74 GLV+LGVPCNQFG+Q Sbjct 15207258 GLVILGVPCNQFGHQ 15207302 > KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold10, whole genome shotgun sequence Length=26077971 Score = 159 bits (403), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 71/117 (61%), Positives = 90/117 (77%), Gaps = 0/117 (0%) Frame = -2 Query 74 QENCTNEEILLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLKEKLPFPSDEPMPF 133 QENCTN EIL SL++VRPG G++P F L EK DVNG N HP+F +LK KLP+P D+P Sbjct 9655022 QENCTNGEILHSLQHVRPGGGFKPNFTLFEKCDVNGANTHPVFAYLKFKLPYPEDDPSSL 9654843 Query 134 MSDPKFIIWSPVCRNDIAWNFEKFLIGSDGVPFKRYSRRFLTSGIDGDIKKLLSIPK 190 M DP+F++WSPV R D++WNFEKFLIG +G PFKRYSR F T ++ DI++LL + K Sbjct 9654842 MQDPRFLVWSPVSRADVSWNFEKFLIGPEGEPFKRYSRNFPTIDVEPDIQRLLRLTK 9654672 Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 42/85 (49%), Positives = 63/85 (74%), Gaps = 3/85 (4%) Frame = -1 Query 5 KSFYDITAKTLTGEEFKFSSLQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVL 64 K+FYD+ A +L G+ F+ +G+VVLIENVASL GTT+RD++++N+L ++ + LVVL Sbjct 9655392 KTFYDLRATSLEGDSVDFNVFRGRVVLIENVASL*GTTARDFSELNQLQSKYPHR-LVVL 9655216 Query 65 GVPCNQFGYQENCTNEEILLSLKYV 89 G PCNQFGYQ +N E+ L + ++ Sbjct 9655215 GFPCNQFGYQ--VSNSEVNLFIHFL 9655147 > KQ557202.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold1, whole genome shotgun sequence Length=25629008 Score = 58.2 bits (139), Expect(2) = 3e-18, Method: Compositional matrix adjust. Identities = 30/58 (52%), Positives = 35/58 (60%), Gaps = 4/58 (7%) Frame = -2 Query 120 KEKLPFPSDEPMPFMSDPKFIIWSPVCRNDIAWNFEKFLIGSDGVPFKRYSRRFLTSG 177 + LPF + P + D K WSP+C NDI WNFEKFLI SDG PFKR +SG Sbjct 17124844 QNSLPFVN----PLIGDIKKFYWSPICVNDIRWNFEKFLINSDGTPFKR*RSHTKSSG 17124683 Score = 54.3 bits (129), Expect(2) = 3e-18, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 0/43 (0%) Frame = -3 Query 78 TNEEILLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLK 120 NEE+L LKYVRPG G+ P F + K++VNG N PLFT+LK Sbjct 17125059 VNEEMLNVLKYVRPGGGFVPTFPVFAKIEVNGLNEEPLFTYLK 17124931 Score = 40.8 bits (94), Expect(2) = 4e-08, Method: Compositional matrix adjust. Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 0/38 (0%) Frame = -2 Query 5 KSFYDITAKTLTGEEFKFSSLQGKVVLIENVASLXGTT 42 KS YD +A+TL GEE S +GKV+LI NVA+ G+T Sbjct 17126302 KSIYDFSAETLEGEEVPLSIYKGKVLLIVNVATF*GST 17126189 Score = 37.4 bits (85), Expect(2) = 4e-08, Method: Compositional matrix adjust. Identities = 16/31 (52%), Positives = 17/31 (55%), Gaps = 0/31 (0%) Frame = -1 Query 45 DYTQMNELHERFAEKGLVVLGVPCNQFGYQE 75 Y +MN L E F VLG PCNQFG Q Sbjct 17126093 QYNRMNALMEMFGNLNFTVLGFPCNQFGLQS 17126001 > KQ557216.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold15, whole genome shotgun sequence Length=30170098 Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 24/41 (59%), Positives = 29/41 (71%), Gaps = 0/41 (0%) Frame = -3 Query 80 EEILLSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLK 120 + L +YVRPGNG+ P F L+EK DVNGKN +FTFLK Sbjct 21049760 DAFFLDARYVRPGNGFVPNFLLMEKGDVNGKNEQRVFTFLK 21049638 Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 44/114 (39%), Gaps = 32/114 (28%) Frame = -3 Query 6 SFYDITAKTLTGEE-FKFSSLQGKVVLIENVASLXGTTS--------------------- 43 + Y A+TL G F GK VL NVA+ G T Sbjct 21050591 TIYQYNARTLNGSRAVNFGDFAGKTVLFVNVATY*GLTFQYVGKQLHTVGFVT*ALLHSS 21050412 Query 44 ----------RDYTQMNELHERFAEKGLVVLGVPCNQFGYQENCTNEEILLSLK 87 R + +N LHE GL +LG PCNQFG QE T EIL LK Sbjct 21050411 LKFFWFVCSWRFLSALNALHEELKPLGLTILGFPCNQFGKQEPGTKSEILSGLK 21050250 Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/47 (45%), Positives = 28/47 (60%), Gaps = 0/47 (0%) Frame = -2 Query 140 IIWSPVCRNDIAWNFEKFLIGSDGVPFKRYSRRFLTSGIDGDIKKLL 186 + W P+ NDI WNFEKFL+G DG R++ R S + DI+ L Sbjct 21048846 LFWEPLKINDIKWNFEKFLVGPDGKAVMRWNPRVDMSTVRMDIRNYL 21048706 > KQ557224.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold23, whole genome shotgun sequence Length=30408201 Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%) Frame = +3 Query 24 SLQGKVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVLGVPCNQFGYQENCTNEEIL 83 SL+ +V L+ NVAS G T + Y + +L F VL PCNQFG QE ++++I Sbjct 25623393 SLRTQVSLVVNVASECGFTDQHYRDLQQLQRDFGPFHFNVLAFPCNQFGQQEPGSDKDID 25623572 Query 84 LSLKYVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFL 119 ++ V Y F L K+ V G A+ ++ L Sbjct 25623573 SFVRTV-----YGVSFPLFSKIAVVGTGANNVYKHL 25623665 > KQ557204.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold3, whole genome shotgun sequence Length=33259606 Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/95 (31%), Positives = 38/95 (40%), Gaps = 5/95 (5%) Frame = +3 Query 28 KVVLIENVASLXGTTSRDYTQMNELHERFAEKGLVVLGVPCNQFGYQENCTNEEILLSLK 87 + L+ NVAS T Y + ELH VL PC QFG E + +I K Sbjct 24957945 QASLVVNVASHCQHTEASYKSLQELHRELGTSHFNVLAFPCGQFGDTERGLSRDIEAFAK 24958124 Query 88 YVRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLKEK 122 + Y F K+ + G A P F FL + Sbjct 24958125 -----STYGVTFPFFSKIKILGTEAEPAFRFLTGR 24958214 > KQ557222.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold21, whole genome shotgun sequence Length=28200517 Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 19/33 (58%), Gaps = 0/33 (0%) Frame = +1 Query 89 VRPGNGYEPKFQLLEKVDVNGKNAHPLFTFLKE 121 VRPG + P FQL +K +N N H LF +E Sbjct 8854063 VRPGQLWWPDFQLEQKETINHVNDHKLFDSSRE 8854161 > KQ557214.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold13, whole genome shotgun sequence Length=22457735 Score = 31.2 bits (69), Expect = 9.1, Method: Compositional matrix adjust. Identities = 19/53 (36%), Positives = 30/53 (57%), Gaps = 7/53 (13%) Frame = +1 Query 64 LGVPCNQFGYQENCTNEEILL------SLKYVRPGNGYEPKFQLLEKVDVNGK 110 L PC F ++ T+EE+LL S+ R N ++P+F +LEK+ +GK Sbjct 291046 LFCPCQIF-FRNKFTDEELLLTCFTLASVTEKRVSNVFKPRFTILEKI*SSGK 291201 Lambda K H a alpha 0.320 0.140 0.421 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 17709694050 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40