TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
           25 sequences; 708,396,389 total letters



Query= SPP00000613_2.0 # Protein # Iodothyronine deiodinase 3b (DIO3b) #
Zebrafish

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Sca...    308   2e-93


> KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold10, 
whole genome shotgun sequence
Length=26077971

 Score =   308 bits (790),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 146/253 (58%), Positives = 197/253 (78%), Gaps = 6/253 (2%)
 Frame = +3

Query  1        RALKNALVCLLILPRFLVAAFMLWCLDFLCVRKRVLVHLQeraeeeeedaeeeeePLCIS  60
                +A+KNA VC ++LPRFL+AA + W LDFLC+RKR    ++E+  +  +       P+CIS
Sbjct  3441936  KAVKNAAVCFVLLPRFLMAAVVFWLLDFLCIRKRFFFRVKEQGGDAIDP------PVCIS  3442097

Query  61       DSSRMFSWESLKAVFHGHKLDYMKSARLGHAAPDSEVFPLAEPRRGRVLEFARGHRPLVL  120
                DS+R+FS ESLKAV+HG KLD++K+A LG  AP++EV  L + +  R+L+FA G RPL+L
Sbjct  3442098  DSNRLFSLESLKAVWHGQKLDFLKAAHLGRGAPNTEVVRLEDRQHSRILDFAHGDRPLIL  3442277

Query  121      SFGSCSXPPFMRRLKAFRRLVLRYADVADALLIYIEEAHPSDGWRSSDAPHQIRRHRSLE  180
                +FGSC+ PPFM RLKAF+ +    AD+AD +++YIEEAHPSDGW S+DAP+QI  H+SLE
Sbjct  3442278  NFGSCT*PPFMARLKAFQEVAQLNADIADTVVVYIEEAHPSDGWTSTDAPYQIPTHQSLE  3442457

Query  181      ERLSAARLMEREAPGCAVVADGMENAANSAYGAYFDRLYIVQDGRVVYQGGRGPEGFRIS  240
                ERLSAA L+  E PGC VVAD ME+++++AYGAYF+RLY++  G V YQGGRGPEG+R+S
Sbjct  3442458  ERLSAAHLIHLEVPGCRVVADNMEDSSSAAYGAYFNRLYVLHRGTVAYQGGRGPEGYRVS  3442637

Query  241      ELRHWLDRYRERL  253
                ELR WLD++R+ L
Sbjct  3442638  ELRAWLDQHRKAL  3442676


 Score =   132 bits (332),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 74/185 (40%), Positives = 110/185 (59%), Gaps = 23/185 (12%)
 Frame = -2

Query  87       RLGHAAPDSEVFPLAE-PR----------------RGRVLEFARGHRPLVLSFGSCSXPP  129
                +LG  AP+S+V  + + PR                  R+L+F    RPLV++FGS + PP
Sbjct  7723124  KLGCEAPNSKVVKVPDGPRWSSTVVPYGSRIQTGGECRLLDFESSDRPLVVNFGSAT*PP  7722945

Query  130      FMRRLKAFRRLVLRYADVADALLIYIEEAHPSDGWRS---SDAPHQIRRHRSLEERLSAA  186
                F+  L AFR+LV  ++DVAD LL+YI+EAHP+DGW +          R+H++LEER+ AA
Sbjct  7722944  FISHLPAFRQLVEDFSDVADFLLVYIDEAHPADGWVAPPMGPCSFSFRKHQNLEERIGAA  7722765

Query  187      RLMERE---APGCAVVADGMENAANSAYGAYFDRLYIVQDGRVVYQGGRGPEGFRISELR  243
                R +       P C +VAD M+N AN AYG   +R+ IV   ++ Y GG+GP  + + ++R
Sbjct  7722764  RQLIDHFSLPPQCQLVADCMDNNANVAYGVANERVCIVHQRKIAYLGGKGPFFYNLKDVR  7722585

Query  244      HWLDR  248
                 WL++
Sbjct  7722584  QWLEQ  7722570



Lambda      K        H        a         alpha
   0.328    0.141    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 31877435790


  Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
    Posted date:  Oct 21, 2016  4:48 PM
  Number of letters in database: 708,396,389
  Number of sequences in database:  25



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40