TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
           25 sequences; 708,396,389 total letters



Query= SPP00000612_2.0 # Protein # Iodothyronine deiodinase 3a (DIO3a) #
Zebrafish

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Sca...    287   1e-85
  KQ557218.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  34.3    2.1  
  KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Sca...  32.3    7.2  


> KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold10, 
whole genome shotgun sequence
Length=26077971

 Score =   287 bits (734),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 157/268 (59%), Positives = 200/268 (75%), Gaps = 11/268 (4%)
 Frame = +3

Query  6        QGSAGVQ--------SALKNAAVCVlllprfllaalmlclldflcIRRKLLLKMQEGAFS  57
                QG AG           A+KNAAVC +LLPRFL+AA++  LLDFLCIR++   +++E    
Sbjct  3441891  QGRAGYHQKVMMNTVKAVKNAAVCFVLLPRFLMAAVVFWLLDFLCIRKRFFFRVKEQG-G  3442067

Query  58       SPDDPPLRVSDSNKMFTLESLRAVWYGQKLDFFKSARLGGAAPNTEVFPLDGDARAAERI  117
                   DPP+ +SDSN++F+LESL+AVW+GQKLDF K+A LG  APNTEV  L+   R   RI
Sbjct  3442068  DAIDPPVCISDSNRLFSLESLKAVWHGQKLDFLKAAHLGRGAPNTEVVRLED--RQHSRI  3442241

Query  118      LDYARGRRPLILNFGSCSXPPFMTRLSAFQRVARQYADIADSLLVYIEEAHPSDGWVSSD  177
                LD+A G RPLILNFGSC+ PPFM RL AFQ VA+  ADIAD+++VYIEEAHPSDGW S+D
Sbjct  3442242  LDFAHGDRPLILNFGSCT*PPFMARLKAFQEVAQLNADIADTVVVYIEEAHPSDGWTSTD  3442421

Query  178      APVQIPRHRCLEDRLRAAQMLHREAAGSAVVVDSMQNSCNAAYGAYFERLYIVKDATVVY  237
                AP QIP H+ LE+RL AA ++H E  G  VV D+M++S +AAYGAYF RLY++   TV Y
Sbjct  3442422  APYQIPTHQSLEERLSAAHLIHLEVPGCRVVADNMEDSSSAAYGAYFNRLYVLHRGTVAY  3442601

Query  238      QGGRGPEGYRIAELRDWLERYRSGLQES  265
                QGGRGPEGYR++ELR WL+++R  L ++
Sbjct  3442602  QGGRGPEGYRVSELRAWLDQHRKALHKT  3442685


 Score =   125 bits (315),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 71/189 (38%), Positives = 106/189 (56%), Gaps = 27/189 (14%)
 Frame = -2

Query  93       ARLGGAAPNTEVFPLDGDARAAE---------------RILDYARGRRPLILNFGSCSXP  137
                 +LG  APN++V  +    R +                R+LD+    RPL++NFGS + P
Sbjct  7723127  VKLGCEAPNSKVVKVPDGPRWSSTVVPYGSRIQTGGECRLLDFESSDRPLVVNFGSAT*P  7722948

Query  138      PFMTRLSAFQRVARQYADIADSLLVYIEEAHPSDGWVSSDAPVQIP------RHRCLEDR  191
                PF++ L AF+++   ++D+AD LLVYI+EAHP+DGWV   AP   P      +H+ LE+R
Sbjct  7722947  PFISHLPAFRQLVEDFSDVADFLLVYIDEAHPADGWV---APPMGPCSFSFRKHQNLEER  7722777

Query  192      LRAAQMLHREAA---GSAVVVDSMQNSCNAAYGAYFERLYIVKDATVVYQGGRGPEGYRI  248
                + AA+ L    +      +V D M N+ N AYG   ER+ IV    + Y GG+GP  Y +
Sbjct  7722776  IGAARQLIDHFSLPPQCQLVADCMDNNANVAYGVANERVCIVHQRKIAYLGGKGPFFYNL  7722597

Query  249      AELRDWLER  257
                 ++R WLE+
Sbjct  7722596  KDVRQWLEQ  7722570


> KQ557218.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold17, 
whole genome shotgun sequence
Length=29603586

 Score = 34.3 bits (77),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (5%)
 Frame = +2

Query  173      WVSSDAPVQIPRHRCLEDRLRAAQMLHREAAGSAVVVDSMQNSC  216
                W+ +D  VQ+ +H  L+ R RA+   ++ AAG   ++   QN+C
Sbjct  5094818  WLQTD--VQLCKHTSLKSRSRASCTTNKNAAGGV*IISQQQNTC  5094943


> KQ557221.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold20, 
whole genome shotgun sequence
Length=29933922

 Score = 32.3 bits (72),  Expect = 7.2, Method: Compositional matrix adjust.
 Identities = 23/80 (29%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
 Frame = -2

Query  156       IADSLLVYIEEAHPSDGWVSSDAPVQIPRHRCLEDRLRAAQMLHREAAGSAVVVDSMQNS  215
                 + D +LV  + AHPS     SDAP  +P  R           L  EA G  +V D  +N 
Sbjct  21022760  LRDGILVSRQPAHPSVLETESDAPAPLPVSRV---------YLTNEADGDGMVSDDPRNP  21022608

Query  216       CNAAYGAYFERLYIVKDATV  235
                       + F  +Y  +  +V
Sbjct  21022607  FKTHRNSVFYNMYPARGRSV  21022548



Lambda      K        H        a         alpha
   0.321    0.135    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 34474856484


  Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f
a
    Posted date:  Oct 21, 2016  4:48 PM
  Number of letters in database: 708,396,389
  Number of sequences in database:  25



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40