TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a 25 sequences; 708,396,389 total letters Query= SPP00000611_2.0 # Protein # Iodothyronine deiodinase 1 (DIO1) # Zebrafish Length=226 Score E Sequences producing significant alignments: (Bits) Value KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 108 9e-25 KQ557201.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 33.5 2.5 KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Sca... 32.0 8.4 > KQ557211.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold10, whole genome shotgun sequence Length=26077971 Score = 108 bits (270), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 64/165 (39%), Positives = 99/165 (60%), Gaps = 2/165 (1%) Frame = +3 Query 63 FFSLAFIKTLFFVNWCSLGLEAFEGHSAPDSALITL-DRQKTSVHRFLKGNRPLVLSFGS 121 FSL +K ++ A G AP++ ++ L DRQ + + F G+RPL+L+FGS Sbjct 3442110 LFSLESLKAVWHGQKLDFLKAAHLGRGAPNTEVVRLEDRQHSRILDFAHGDRPLILNFGS 3442289 Query 122 CTXPPFLYKLDEFKQLVKDFSNVADFLIVYLAEAHATDAWAFKNN-VDISVHKNleerla 180 CT PPF+ +L F+++ + +++AD ++VY+ EAH +D W + I H++LEERL+ Sbjct 3442290 CT*PPFMARLKAFQEVAQLNADIADTVVVYIEEAHPSDGWTSTDAPYQIPTHQSLEERLS 3442469 Query 181 aartllKEDPPCPVVVDEMNNITASKYGALPERLYVIQSGKVIYQ 225 AA + E P C VV D M + +++ YGA RLYV+ G V YQ Sbjct 3442470 AAHLIHLEVPGCRVVADNMEDSSSAAYGAYFNRLYVLHRGTVAYQ 3442604 Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/124 (44%), Positives = 73/124 (59%), Gaps = 7/124 (6%) Frame = -2 Query 108 FLKGNRPLVLSFGSCTXPPFLYKLDEFKQLVKDFSNVADFLIVYLAEAHATDAWAFKNNV 167 F +RPLV++FGS T PPF+ L F+QLV+DFS+VADFL+VY+ EAH D W Sbjct 7723001 FESSDRPLVVNFGSAT*PPFISHLPAFRQLVEDFSDVADFLLVYIDEAHPADGWVAPPMG 7722822 Query 168 DISV----HKNleerlaaartllKE---DPPCPVVVDEMNNITASKYGALPERLYVIQSG 220 S H+NLEER+ AAR L+ P C +V D M+N YG ER+ ++ Sbjct 7722821 PCSFSFRKHQNLEERIGAARQLIDHFSLPPQCQLVADCMDNNANVAYGVANERVCIVHQR 7722642 Query 221 KVIY 224 K+ Y Sbjct 7722641 KIAY 7722630 > KQ557201.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold0, whole genome shotgun sequence Length=29966060 Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/53 (36%), Positives = 27/53 (51%), Gaps = 0/53 (0%) Frame = -1 Query 109 LKGNRPLVLSFGSCTXPPFLYKLDEFKQLVKDFSNVADFLIVYLAEAHATDAW 161 L NR LV F PP +YK +E K LV+D+S +I + + A+ W Sbjct 21722747 LSANRSLVQGFL*GPFPPDVYK*NE*KPLVRDYSTERRSIIPWFTQKEASRDW 21722589 > KQ557213.1 Xiphophorus couchianus unplaced genomic scaffold Scaffold12, whole genome shotgun sequence Length=28566418 Score = 32.0 bits (71), Expect = 8.4, Method: Compositional matrix adjust. Identities = 22/65 (34%), Positives = 29/65 (45%), Gaps = 0/65 (0%) Frame = +1 Query 61 PAFFSLAFIKTLFFVNWCSLGLEAFEGHSAPDSALITLDRQKTSVHRFLKGNRPLVLSFG 120 P FF+ F V CSLG + S DS L+ +R +S R L G + + L G Sbjct 26663152 PPFFTGVRNNDEFSV*TCSLGAATDKALSPLDSNLVLANRSLSSDLRILGGGQIIKLKIG 26663331 Query 121 SCTXP 125 S P Sbjct 26663332 SQNGP 26663346 Lambda K H a alpha 0.326 0.138 0.423 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 25738083236 Database: /export/cursos/20428/BI/genomes/2016/Xiphophorus_couchianus/genome.f a Posted date: Oct 21, 2016 4:48 PM Number of letters in database: 708,396,389 Number of sequences in database: 25 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40