Command line: [exonerate -m p2g --showtargetgff -q eEFsec.fa -t eEFsec.subseq] Hostname: [ws116037u] C4 Alignment: ------------ Query: SPP00000144_2.0 # Protein # Eukaryotic elongation factor (eEFsec) # Human Target: JSZB01017587.1:subseq(20000,200000) Manis javanica isolate MP_PG03-UM SCAFFOLD21508, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1193 Query range: 0 -> 263 Target range: 164606 -> 50382 1 : MetAlaGlyArgArgValAsnValAsnValGlyValLeuGlyHisIleAspSerGlyL : 20 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| MetAlaGlyArgArgValAsnValAsnValGlyValLeuGlyHisIleAspSerGlyL 164606 : ATGGCCGGGCGGCGGGTGAACGTGAACGTGGGCGTGCTGGGCCACATCGACAGCGGCA : 164549 21 : ysThrAlaLeuAlaArgAlaLeuSerThrThrAlaSerThrAlaAlaPheAspLysGl : 39 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ysThrAlaLeuAlaArgAlaLeuSerThrThrAlaSerThrAlaAlaPheAspLysGl 164548 : AGACGGCGCTAGCGCGGGCGCTGAGCACCACGGCCTCCACCGCCGCCTTCGACAAGCA : 164492 40 : nProGlnSerArgGluArgGlyIleThrLeuAspLeuGlyPheSerCysPheSerVal : 58 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| nProGlnSerArgGluArgGlyIleThrLeuAspLeuGlyPheSerCysPheSerVal 164491 : GCCGCAGAGCCGCGAGCGCGGCATCACGCTCGACTTGGGGTTCTCGTGCTTCTCGGTG : 164435 59 : ProLeuProAlaArgLeuArgSerSerLeuProGluPheGlnAlaAlaProGluAlaG : 78 |||||||||! !||||||||||||:!!||||||! !! !! !! !|||||||||||| ProLeuProGluArgLeuArgSerAlaLeuProValSerProGluAlaProGluAla- 164434 : CCGCTACCCGAGCGCCTGCGGTCGGCGCTGCCCGTGTCCCCGGAGGCGCCCGAGGCC- : 164375 79 : luProGluProGlyGluProLeuLeuGlnValThrLeuValAspCysProGlyHisAl : 97 |||||||||! !||||||||||||||||||||||||||||||||||||||||| -----GluProGlyGlyProLeuLeuGlnValThrLeuValAspCysProGlyHisAl 164374 : -----GAGCCCGGCGGGCCGCTGCTTCAGGTCACGCTGGTCGACTGTCCCGGGCACGC : 164324 98 : aSerLeuIleArgThrIleIleGly{G} >>>> Target Intron 1 >>>> { : 106 |||||||||||||||||||||||||{|} 89505 bp { aSerLeuIleArgThrIleIleGly{G}++ ++{ 164323 : CTCCCTCATCCGGACCATCATTGGC{G}gt.........................ag{ : 74791 107 : ly}AlaGlnIleIleAspLeuMetMetLeuValIleAspValThrLysGlyMetGlnT : 125 ||}||||||||||||||||||||||||||||||||||||||||||||||||||||||| ly}AlaGlnIleIleAspLeuMetMetLeuValIleAspValThrLysGlyMetGlnT 74790 : gG}GCCCAGATCATAGATCTGATGATGCTGGTCATTGATGTGACCAAAGGGATGCAGA : 74735 126 : hrGlnSerAlaGluCysLeuValIleGlyGlnIleAlaCysGlnLysLeuValValVa : 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| hrGlnSerAlaGluCysLeuValIleGlyGlnIleAlaCysGlnLysLeuValValVa 74734 : CCCAGTCAGCAGAGTGCCTTGTGATTGGGCAGATCGCCTGCCAGAAGCTGGTTGTGGT : 74678 145 : lLeuAsnLysIleAspLeuLeuProGluGlyLysArgGlnAlaAlaIleAspLysMet : 163 |||||||||||||||||||||| !!||||||||||||||||||.!!|||||||||||| lLeuAsnLysIleAspLeuLeuAlaGluGlyLysArgGlnAlaThrIleAspLysMet 74677 : GCTGAACAAAATAGACCTCTTAGCTGAAGGGAAGAGGCAAGCGACGATTGATAAAATG : 74621 164 : ThrLysLysMetGlnLysThrLeuGluAsnThr{Ly} >>>> Target Intron : 175 |||||||||||||||||||||||||||||||||{||} 21599 bp ThrLysLysMetGlnLysThrLeuGluAsnThr{Ly}++ 74620 : ACCAAGAAAATGCAGAAGACCCTAGAGAACACC{AA}gt................... : 74581 176 : 2 >>>> {s}PheArgGlyAlaProIleIleProValAlaAlaLysProGlyGlyPr : 191 {|}||||||||||||||||||||||||||||||||||||||||||||||| ++{s}PheArgGlyAlaProIleIleProValAlaAlaLysProGlyGlyPr 74580 : ......ag{G}TTCCGAGGTGCACCGATTATACCTGTGGCGGCCAAGCCTGGGGGACC : 52938 192 : oGluAlaProGluThrGluAlaProGlnGlyIleProGluLeuIleGlu >>>> Ta : 208 |||||||||||||||||||||||||||||||||| !!|||||||||||| oGluAlaProGluThrGluAlaProGlnGlyIleSerGluLeuIleGlu++ 52937 : AGAGGCCCCTGAAACAGAAGCTCCACAGGGCATCTCAGAGCTCATTGAGgt....... : 52885 209 : rget Intron 3 >>>> LeuLeuThrSerGlnIleSerIleProThrArgAspPr : 220 2337 bp ||||||||||||||||||! !||||||.!!|||||||| ++LeuLeuThrSerGlnIlePheIleProAlaArgAspPr 52884 : ..................agCTCCTGACGTCCCAGATTTTCATCCCAGCAAGAGACCC : 50514 221 : oSerGlyProPheLeuMetSerValAspHisCysPheSerIleLysGlyGlnGlyThr : 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| oSerGlyProPheLeuMetSerValAspHisCysPheSerIleLysGlyGlnGlyThr 50513 : CTCGGGACCGTTTCTCATGTCTGTGGACCACTGTTTCTCCATCAAAGGCCAAGGCACT : 50457 240 : ValMetThrGlyThrIleLeuSerGlySerIleSerLeuGlyAspSerValGluIleP : 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ValMetThrGlyThrIleLeuSerGlySerIleSerLeuGlyAspSerValGluIleP 50456 : GTGATGACAGGGACCATCCTCTCAGGCTCCATCAGCCTTGGTGACAGTGTGGAGATTC : 50397 260 : roAlaLeuLysVal : 263 |||||||||||||| roAlaLeuLysVal 50396 : CTGCCCTCAAGGTC : 50383 vulgar: SPP00000144_2.0 0 263 . JSZB01017587.1:subseq(20000,200000) 164606 50382 - 1193 M 77 231 G 2 0 M 26 78 S 0 1 5 0 2 I 0 89501 3 0 2 S 1 2 M 68 204 S 0 2 5 0 2 I 0 21595 3 0 2 S 1 1 M 32 96 5 0 2 I 0 2333 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-11 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local gene 50383 164606 1193 - . gene_id 1 ; sequence SPP00000144_2.0 ; gene_orientation + JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local cds 164297 164606 . - . JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local exon 164297 164606 . - . insertions 0 ; deletions 2 JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local splice5 164295 164296 . - . intron_id 1 ; splice_site "GT" JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local intron 74792 164296 . - . intron_id 1 JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local splice3 74792 74793 . - . intron_id 0 ; splice_site "ag" JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local cds 74584 74791 . - . JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local exon 74584 74791 . - . insertions 0 ; deletions 0 JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local splice5 74582 74583 . - . intron_id 2 ; splice_site "GT" JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local intron 52985 74583 . - . intron_id 2 JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local splice3 52985 52986 . - . intron_id 1 ; splice_site "AG" JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local cds 52888 52984 . - . JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local exon 52888 52984 . - . insertions 0 ; deletions 0 JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local splice5 52886 52887 . - . intron_id 3 ; splice_site "GT" JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local intron 50551 52887 . - . intron_id 3 JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local splice3 50551 50552 . - . intron_id 2 ; splice_site "AG" JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local cds 50383 50550 . - . JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local exon 50383 50550 . - . insertions 0 ; deletions 0 JSZB01017587.1:subseq(20000,200000) exonerate:protein2genome:local similarity 50383 164606 1193 - . alignment_id 1 ; Query SPP00000144_2.0 ; Align 164607 1 231 ; Align 164376 80 78 ; Align 74790 107 204 ; Align 52984 176 96 ; Align 50551 208 168 # --- END OF GFF DUMP --- # -- completed exonerate analysis