TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00000144_2.0 # Protein # Eukaryotic elongation factor (eEFsec) # Human Length=596 Score E Sequences producing significant alignments: (Bits) Value JSZB01076144.1 Manis javanica isolate MP_PG03-UM C40932767, who... 413 2e-130 JSZB01017587.1 Manis javanica isolate MP_PG03-UM SCAFFOLD21508,... 137 1e-31 JSZB01001801.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2006, ... 110 4e-23 JSZB01007850.1 Manis javanica isolate MP_PG03-UM SCAFFOLD9088, ... 65.5 6e-09 JSZB01040977.1 Manis javanica isolate MP_PG03-UM SCAFFOLD56788,... 43.5 0.030 JSZB01003591.1 Manis javanica isolate MP_PG03-UM SCAFFOLD4049, ... 43.1 0.047 JSZB01030167.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39565,... 42.0 0.089 JSZB01003359.1 Manis javanica isolate MP_PG03-UM SCAFFOLD3772, ... 36.6 4.8 > JSZB01076144.1 Manis javanica isolate MP_PG03-UM C40932767, whole genome shotgun sequence Length=2729 Score = 413 bits (1061), Expect = 2e-130, Method: Compositional matrix adjust. Identities = 192/220 (87%), Positives = 204/220 (93%), Gaps = 0/220 (0%) Frame = +3 Query 262 KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISVEK 321 +VVKKVKSMQMFHMP+TSAMQGDRLGICVTQFDP+LLERGLVCAPESLHTVHAALISVEK Sbjct 861 QVVKKVKSMQMFHMPVTSAMQGDRLGICVTQFDPRLLERGLVCAPESLHTVHAALISVEK 1040 Query 322 IPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNFDQEPILDSFNFSQEYLFQEQYLS 381 IPYFRG LQTKAKFHITVGHETVMGRLMFFSPAPD FD EP+LDSF+FS+EYLFQEQYL Sbjct 1041 IPYFRGSLQTKAKFHITVGHETVMGRLMFFSPAPDCFDLEPVLDSFDFSREYLFQEQYLC 1220 Query 382 KDLTPAVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDADIHTNT 441 +DL PAVTD+ EADKK QA CPRQQWAL+EFEKPVTCPRLCLVIGSRLD DIH NT Sbjct 1221 RDLAPAVTDSGEADKKEAQAPGSRCPRQQWALMEFEKPVTCPRLCLVIGSRLDTDIHANT 1400 Query 442 CRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVER 481 CRLAFHG+LLHGLED+NY +SFLPRLKVYKLKHK GLVER Sbjct 1401 CRLAFHGVLLHGLEDKNYTESFLPRLKVYKLKHKQGLVER 1520 > JSZB01017587.1 Manis javanica isolate MP_PG03-UM SCAFFOLD21508, whole genome shotgun sequence Length=241155 Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 68/76 (89%), Positives = 72/76 (95%), Gaps = 0/76 (0%) Frame = -3 Query 100 IRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAA 159 + +++ GAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLL EGKRQA Sbjct 94810 VSSLLPGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLAEGKRQAT 94631 Query 160 IDKMTKKMQKTLENTK 175 IDKMTKKMQKTLENTK Sbjct 94630 IDKMTKKMQKTLENTK 94583 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/94 (85%), Positives = 82/94 (87%), Gaps = 2/94 (2%) Frame = -3 Query 13 LGHIDSGKtalaralsttastaaFDKQPQSRERGITLDLGFSCFSVPLPARLRSSlpefq 72 LGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLP RLRS+ Sbjct 184570 LGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPERLRSA--LPV 184397 Query 73 aapeaepepgepllQVTLVDCPGHASLIRTIIGG 106 + E EPG PLLQVTLVDCPGHASLIRTIIGG Sbjct 184396 SPEAPEAEPGGPLLQVTLVDCPGHASLIRTIIGG 184295 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 54/56 (96%), Positives = 54/56 (96%), Gaps = 0/56 (0%) Frame = -2 Query 208 LLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV 263 LLTSQI IP RDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV Sbjct 70550 LLTSQIFIPARDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV 70383 > JSZB01001801.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2006, whole genome shotgun sequence Length=265220 Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 59/83 (71%), Positives = 62/83 (75%), Gaps = 4/83 (5%) Frame = +2 Query 477 GLVERAMDDYSVIGRSLFKKETNIQLFVGLKVHLSTGELGIIDSAFGQSGKFKIHIPGGL 536 G+ E+ MDDYSVIGRSLFKKETNIQLFVGLKVHLSTGELG IDSAFGQSGKFKIHIPG Sbjct 15623 GVWEQVMDDYSVIGRSLFKKETNIQLFVGLKVHLSTGELGTIDSAFGQSGKFKIHIPG-- 15796 Query 537 SPESKKILTPALKKRARAGRGEA 559 E L P + RGE Sbjct 15797 --ECGYFLLPIGAMQDVDTRGEV 15859 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 50/69 (72%), Positives = 57/69 (83%), Gaps = 0/69 (0%) Frame = +1 Query 528 FKIHIPGGLSPESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLSLTFKRYVFD 587 F + + GGLSPE+KKILTP +KR RAGRGEA +QEE AE SEP+QHV LSL+FKRYVFD Sbjct 61216 FPLCLAGGLSPETKKILTPTFRKRGRAGRGEAAKQEEGAEHSEPAQHVGLSLSFKRYVFD 61395 Query 588 THKRMVQSP 596 HK MVQSP Sbjct 61396 IHKHMVQSP 61422 > JSZB01007850.1 Manis javanica isolate MP_PG03-UM SCAFFOLD9088, whole genome shotgun sequence Length=350314 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 107/234 (46%), Gaps = 38/234 (16%) Frame = -3 Query 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQKLVVVL 145 V+ VDCPGH L+ T++ GA ++D +L+I + Q Q++E L +I K +++L Sbjct 162167 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILIL 161988 Query 146 -NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVaakpggpeapeteapqgIPE 204 NKIDL+ E + + +++ +Q T+ GAPIIP+ + I Sbjct 161987 QNKIDLVKESQAKEQYEQILAFVQGTVA----EGAPIIPI----------SAQLKYNIEV 161850 Query 205 LIELLTSQISIPTRDPSGPFLMSVDHCFSIKG--------QGTVMTGTILSGSISLGDSV 256 + E + +I +P RD + + V F + G V G++L G + LG + Sbjct 161849 VCEYIVKKIPVPLRDFTSEPRLIVIRSFDVNKPGCEVDDLNGGVAGGSVLKGVLKLGQEI 161670 Query 257 EI-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKL 297 E+ P + + K+ S+ H + A G +G+ T+ DP L Sbjct 161669 EVRPGIVSKDSEGKLVCKPIFSKIVSLFAEHNDLQYAAPGGLIGVG-TKIDPTL 161511 > JSZB01040977.1 Manis javanica isolate MP_PG03-UM SCAFFOLD56788, whole genome shotgun sequence Length=30802 Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 8/69 (12%) Frame = -1 Query 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKG-MQT------QSAECLVIGQIACQK- 140 T++D PGH S + +IGGA DL +LVI KG +T Q+ E ++ + A K Sbjct 13300 TILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKY 13121 Query 141 LVVVLNKID 149 L+V++NK+D Sbjct 13120 LIVLINKMD 13094 > JSZB01003591.1 Manis javanica isolate MP_PG03-UM SCAFFOLD4049, whole genome shotgun sequence Length=613258 Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 0/74 (0%) Frame = -3 Query 232 FSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVT 291 F G GTV G + +G + G V + + +VKS++M H ++ A+ GD +G V Sbjct 144803 FLYPGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVK 144624 Query 292 QFDPKLLERGLVCA 305 K + RG VC Sbjct 144623 NVSVKDIRRGNVCG 144582 > JSZB01030167.1 Manis javanica isolate MP_PG03-UM SCAFFOLD39565, whole genome shotgun sequence Length=110838 Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust. Identities = 23/75 (31%), Positives = 37/75 (49%), Gaps = 0/75 (0%) Frame = -2 Query 231 CFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICV 290 ++ G GTV G + +G + G V + V +VKS++M H ++ A+ GD +G V Sbjct 80963 AVNVSGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNV 80784 Query 291 TQFDPKLLERGLVCA 305 K + RG V Sbjct 80783 KNVSVKDVRRGNVAG 80739 > JSZB01003359.1 Manis javanica isolate MP_PG03-UM SCAFFOLD3772, whole genome shotgun sequence Length=99056 Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 0/45 (0%) Frame = -1 Query 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECL 131 ++T +D PGHA+ GAQ+ D+++LV+ G+ Q+ E + Sbjct 84425 KITFLDTPGHAAFSSMRARGAQVTDIVILVVAADDGVMKQTVESI 84291 Lambda K H a alpha 0.321 0.137 0.401 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 384676328610 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40