Command line: [exonerate -m p2g --showtargetgff -q XPO1.fa -t XPO1.subseq] Hostname: [ws116045U] C4 Alignment: ------------ Query: SPP00002947_2.0 # Protein # exportin 1 (XPO1) # Human (Homo sapiens) Target: JSZB01010493.1:subseq(34000,103292) Manis javanica isolate MP_PG03-UM SCAFFOLD12323, whole genome shotgun sequence Model: protein2genome:local Raw score: 5317 Query range: 0 -> 1071 Target range: 50478 -> 85336 1 : MetProAlaIleMetThrMetLeuAlaAspHisAlaAlaArgGlnLeuLeuAspPheSer : 20 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| MetProAlaIleMetThrMetLeuAlaAspHisAlaAlaArgGlnLeuLeuAspPheSer 50479 : ATGCCAGCAATTATGACAATGTTAGCAGACCATGCAGCTCGTCAGCTGCTTGATTTCAGC : 50536 21 : GlnLysLeuAspIleAsnLeuLeuAspAsnValValAsnCysLeuTyrHisGlyGluGly : 40 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlnLysLeuAspIleAsnLeuLeuAspAsnValValAsnCysLeuTyrHisGlyGluGly 50537 : CAAAAACTGGATATCAACCTTTTAGACAATGTGGTGAATTGTTTGTACCATGGAGAAGGA : 50596 41 : AlaGln >>>> Target Intron 1 >>>> GlnArgMetAlaGlnGluValLeuT : 51 |||||| 4328 bp ||||||||||||||||||||||||| AlaGln++ ++GlnArgMetAlaGlnGluValLeuT 50597 : GCCCAGgt.........................agCAAAGAATGGCTCAAGAAGTGCTGA : 54957 52 : hrHisLeuLysGluHisProAspAlaTrpThrArgValAspThrIleLeuGluPheSerG : 71 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| hrHisLeuLysGluHisProAspAlaTrpThrArgValAspThrIleLeuGluPheSerG 54958 : CACATTTAAAGGAGCATCCTGATGCATGGACACGAGTCGACACAATTTTGGAATTTTCAC : 55017 72 : lnAsnMetAsnThrLys >>>> Target Intron 2 >>>> TyrTyrGlyLeuGl : 81 ||||||||||||||||| 3487 bp |||||||||||||| lnAsnMetAsnThrLys++ ++TyrTyrGlyLeuGl 55018 : AGAATATGAACACGAAAgt.........................agTATTATGGACtaca : 58534 82 : nIleLeuGluAsnValIleLysThrArgTrpLysIleLeuProArgAsnGlnCysGlu{G : 101 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||{| nIleLeuGluAsnValIleLysThrArgTrpLysIleLeuProArgAsnGlnCysGlu{G 58535 : aattttggaaaatgtgatAAAAACAAGGTGGAAGATCCTTCCAAGGAACCAGTGTGAA{G : 58594 102 : } >>>> Target Intron 3 >>>> {ly}IleLysLysTyrValValGlyLeuIl : 110 } 10591 bp {||}|||||||||||||||||||||||||| }++ ++{ly}IleLysLysTyrValValGlyLeuIl 58595 : }gt.........................ag{ga}attaaaaaatacgTTGTTGGCCTCAT : 69212 111 : eIleLysThrSerSerAspProThrCysValGlu >>>> Target Intron 4 >>> : 122 |||||||||||||||||||||||||||||||||| 215 bp eIleLysThrSerSerAspProThrCysValGlu++ 69213 : CATTAAGACGTCATCTGACCCAACTTGTGTAGAGgt........................ : 69250 123 : > LysGluLysValTyrIleGlyLysLeuAsnMetIleLeuValGln >>>> Targe : 137 ||||||||||||||||||||||||||||||||||||||||||||| 1 ++LysGluLysValTyrIleGlyLysLeuAsnMetIleLeuValGln++ 69251 : .agaaggAAAAGGTGTATATCGGGAAATTAAATATGATTCTTGTTCAGgt.......... : 69510 138 : t Intron 5 >>>> IleLeuLysGlnGluTrpProLysHisTrpProThrPheIleS : 151 137 bp ||||||||||||||||||||||||||||||||||||||||||| ++IleLeuLysGlnGluTrpProLysHisTrpProThrPheIleS 69511 : ...............agATACTGAAACAAGAATGGCCAAAGCACTGGCCAACTTTTATCA : 70687 152 : erAspIleValGlyAlaSerArgThrSerGluSerLeuCysGlnAsnAsnMetValIleL : 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| erAspIleValGlyAlaSerArgThrSerGluSerLeuCysGlnAsnAsnMetValIleL 70688 : GTGATATTGTTGGAGCAAGTAGGACCAGTGAAAGTCTCTGTCAGAATAATATGGTGATTC : 70747 172 : euLysLeuLeuSerGluGluValPheAspPheSerSerGlyGlnIleThrGlnValLysS : 191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||: euLysLeuLeuSerGluGluValPheAspPheSerSerGlyGlnIleThrGlnValLysA 70748 : TTAAACTCTTGAGTGAAGAAGTATTTGATTTCTCTAGTGGACAGATAACCCAAGTGAAAG : 70807 192 : erLysHisLeuLysAsp{Se} >>>> Target Intron 6 >>>> {r}MetCysA : 200 !!|||||||||||||||{||} 878 bp {|}||||||| laLysHisLeuLysAsp{Se}+- ++{r}MetCysA 70808 : CTAAGCATTTAAAAGAC{AG}gc.........................ag{t}atgtgCA : 71712 201 : snGluPheSerGlnIlePheGlnLeuCysGlnPheValMet >>>> Target Intro : 214 ||||||||||||||||||||||||||||||||||||||||| 76 bp snGluPheSerGlnIlePheGlnLeuCysGlnPheValMet++ 71713 : ATGAGTTCTCACAAATTTTTCAGCTGTGTCAATTCGTGATGgt................. : 71756 215 : n 7 >>>> GluAsnSerGlnAsnAlaProLeuValHisAlaThrLeuGluThrLeuLe : 230 |||||||||||||||||||||||||||||||||||||||||||||||||| ++GluAsnSerGlnAsnAlaProLeuValHisAlaThrLeuGluThrLeuLe 71757 : ........agGAAAATTCCCAAAATGCTCCACTTGTACACGCAACTTTGGAAACATTGCT : 71878 231 : uArgPheLeuAsnTrpIleProLeuGlyTyrIlePheGluThrLysLeuIleSerThrLe : 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| uArgPheLeuAsnTrpIleProLeuGlyTyrIlePheGluThrLysLeuIleSerThrLe 71879 : CAGATTTCTTAACTGGATTCCACTGGGGTATATTTTTGAGACCAAGTTAATCAGCACATT : 71938 251 : uIleTyrLys >>>> Target Intron 8 >>>> PheLeuAsnValProMetPhe : 260 |||||||||| 1203 bp ||||||||||||||||||||| uIleTyrLys++ ++PheLeuAsnValProMetPhe 71939 : AATTTATAAGgt.........................agttcCTGAATGTTCCGATGTTC : 73171 261 : ArgAsnValSerLeuLysCysLeuThrGluIleAlaGlyValSerValSerGlnTyrGlu : 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ArgAsnValSerLeuLysCysLeuThrGluIleAlaGlyValSerValSerGlnTyrGlu 73172 : CGAAATGTCTCTCTGAAGTGCCTCACTGAGATTGCTGGTGTGAGTGTAAGCCAATATGAG : 73231 281 : GluGlnPheValThrLeuPheThrLeuThrMetMetGlnLeuLysGln >>>> Targe : 297 |||||||||||||||||||||||||||||||||||||||||||||||| GluGlnPheValThrLeuPheThrLeuThrMetMetGlnLeuLysGln++ 73232 : GAACAATTTGTAACACTATTTACACTGACAATGATGCAGCTAAAACAGgt.......... : 73284 298 : t Intron 9 >>>> MetLeuProLeuAsnThrAsnIleArgLeuAlaTyrSerAsnG : 311 553 bp ||||||||||||||||||||||||||||||||||||||||||| ++MetLeuProLeuAsnThrAsnIleArgLeuAlaTyrSerAsnG 73285 : ...............agATGCTGCCTTTAAATACCAATATTCGACTTGCATATTCAAATG : 73877 312 : lyLysAspAspGluGlnAsnPheIleGlnAsnLeuSerLeuPheLeuCysThrPheLeuL : 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| lyLysAspAspGluGlnAsnPheIleGlnAsnLeuSerLeuPheLeuCysThrPheLeuL 73878 : GTAAAGACGATGAGCAGAACTTTATTCAAAATCTCAGTTTGTTTCTCTGTACATTTCTTA : 73937 332 : ysGluHisAspGlnLeuIleGluLysArgLeuAsnLeuArgGluThrLeuMetGlu >> : 350 ||||||||! !||||||||||||||||||||||||||||||||||||||||||||| ysGluHisGlyGlnLeuIleGluLysArgLeuAsnLeuArgGluThrLeuMetGlu++ 73938 : AGGAACATGGTCAACTTATAGAAAAAAGATTAAATCTCAGGGAAACACTCATGGAGgt.. : 73996 351 : >> Target Intron 10 >>>> AlaLeuHisTyrMetLeuLeuValSerGluValG : 361 940 bp |||||||||||||||||||||||||||||||||| ++AlaLeuHisTyrMetLeuLeuValSerGluValG 73997 : ........................agGCCCTTCATTATATGCTATTGGTGTCAGAAGTGG : 74967 362 : luGluThrGluIlePheLysIleCysLeuGluTyrTrpAsnHisLeuAlaAlaGluLeuT : 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| luGluThrGluIlePheLysIleCysLeuGluTyrTrpAsnHisLeuAlaAlaGluLeuT 74968 : AGGAAACAGAAATCTTTAAGATTTGTCTTGAGTACTGGAATCATTTGGCAGCTGAGCTCT : 75027 382 : yrArgGluSerProPheSerThrSerAlaSerProLeuLeuSerGlySerGlnHisPheA : 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| yrArgGluSerProPheSerThrSerAlaSerProLeuLeuSerGlySerGlnHisPheA 75028 : ATAGAGAGAGCCCATTCTCTACATCTGCCTCTCCGTTGCTATCTGGAAGTCAACATTTTG : 75087 402 : spValProProArgArgGlnLeuTyrLeuProMetLeuPheLys >>>> Target In : 416 ||||||||||||||||||||||||||||||||:!:|||! !||| 484 spValProProArgArgGlnLeuTyrLeuProValLeuSerLys++ 75088 : ACGTTCCTCCCAGGAGACAACTGTATTTGCCTGTACTATCCAAGgt.............. : 75134 417 : tron 11 >>>> ValArgLeuLeuMetValSerArgMetAlaLysProGluGluValL : 431 bp |||||||||||||||||||||||||||||||||||||||||||||| ++ValArgLeuLeuMetValSerArgMetAlaLysProGluGluValL 75135 : ............agGTCCGTTTATTGATGGTTAGTCGTATGGCTAAACCAGAGGAAGTAT : 75661 432 : euValValGluAsnAspGlnGlyGluValValArgGluPheMetLysAspThrAspSerI : 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| euValValGluAsnAspGlnGlyGluValValArgGluPheMetLysAspThrAspSerI 75662 : TGGTTGTAGAAAATGATCAGGGAGAAGTTGTGAGAGAATTCATGAAGGACACAGATTCCA : 75721 452 : leAsnLeuTyrLysAsnMetArgGluThrLeu{V} >>>> Target Intron 12 > : 462 ||||||||||||||||||||||||||||||||{|} 187 bp leAsnLeuTyrLysAsnMetArgGluThrLeu{V}++ 75722 : TAAATTTGTATAAGAATATGAGAGAAACATTA{G}gt....................... : 75757 463 : >>> {al}TyrLeuThrHisLeuAspTyrValAspThrGluArgIleMetThrGluLys : 479 {||}||||||||||||||||||||||||||||||||||||||||||||||||||| ++{al}TyrLeuThrHisLeuAspTyrValAspThrGluArgIleMetThrGluLys 75758 : ...ag{tT}TATCTTACCCACCTGGATTATGTAGATACTGAAAGAATAATGACTGAAAAA : 75992 480 : LeuHisAsnGlnValAsnGlyThrGluTrpSerTrpLysAsnLeuAsnThrLeuCysTrp : 499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| LeuHisAsnGlnValAsnGlyThrGluTrpSerTrpLysAsnLeuAsnThrLeuCysTrp 75993 : CTTCACAATCAAGTGAATGGTACAGAGTGGTCATGGAAAAATTTGAACACATTGTGTTGG : 76052 500 : AlaIleGlySerIleSerGlyAlaMetHisGluGluAspGluLysArgPheLeuValThr : 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| AlaIleGlySerIleSerGlyAlaMetHisGluGluAspGluLysArgPheLeuValThr 76053 : GCAATAGGCTCCATTAGTGGAGCAATGCATGAAGAGGATGAGAAACGATTTCTTGTAACT : 76112 520 : ValIleLys >>>> Target Intron 13 >>>> AspLeuLeuGlyLeuCysGlu : 529 ||||||||| 82 bp ||||||||||||||||||||| ValIleLys++ ++AspLeuLeuGlyLeuCysGlu 76113 : GTAATAAAGgt..........................agGATCTATTAGGATTATGTgaa : 76224 530 : GlnLysArgGlyLysAspAsnLysAlaIleIleAlaSerAsnIleMetTyrIleValGly : 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlnLysArgGlyLysAspAsnLysAlaIleIleAlaSerAsnIleMetTyrIleValGly 76225 : cagaagagaggaaaagataaTAAAGCTATTATTGCATCAAATATCATGTACATAGTAGGT : 76284 550 : GlnTyrProArgPheLeuArgAlaHisTrpLysPheLeuLysThrValValAsnLysLeu : 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlnTyrProArgPheLeuArgAlaHisTrpLysPheLeuLysThrValValAsnLysLeu 76285 : CAATATCCAAGATTTTTAAGAGCTCACTGGAAATTTTTGAAGACTGTAGTTAACAAGCTC : 76344 570 : PheGluPheMetHis{G} >>>> Target Intron 14 >>>> {lu}ThrHisAs : 578 |||||||||||||||{|} 94 bp {||}|||||||| PheGluPheMetHis{G}++ ++{lu}ThrHisAs 76345 : TTTGAATTCATGCAC{G}gt..........................ag{ag}ACCCATGA : 76465 579 : pGlyValGlnAspMetAlaCysAspThrPheIleLysIleAlaGlnLysCysArgArgHi : 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| pGlyValGlnAspMetAlaCysAspThrPheIleLysIleAlaGlnLysCysArgArgHi 76466 : TGGAGTCCAGGACATGGCTTGTgatacttttattaaaatagcTCAAAAATGCCGCAGGCA : 76525 599 : sPheValGlnValGlnValGlyGluValMetProPheIleAspGluIleLeuAsnAsnIl : 618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| sPheValGlnValGlnValGlyGluValMetProPheIleAspGluIleLeuAsnAsnIl 76526 : TTTTGTTCAGGTTCAGGTTGGAGAAGTAATGCCATTTATTGATGAGATTTTAAACAACAT : 76585 619 : eAsnThrIleIleCysAspLeuGlnProGlnGln >>>> Target Intron 15 >> : 630 |||||||||||||||||||||||||||||||||| 293 bp eAsnThrIleIleCysAspLeuGlnProGlnGln++ 76586 : AAACACTATAATTTGTGATCTTCAGCCTCAACAGgt........................ : 76623 631 : >> ValHisThrPheTyrGluAlaValGlyTyrMetIleGlyAlaGlnThrAspGlnTh : 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ++ValHisThrPheTyrGluAlaValGlyTyrMetIleGlyAlaGlnThrAspGlnTh 76624 : ..agGTCCATACGTTTTATGAAGCTGTGGGGTACATGATTGGTGCACAAACAGACCAAAC : 76968 649 : rValGlnGluHisLeuIleGluLysTyrMetLeuLeuProAsnGlnValTrpAspSerIl : 668 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| rValGlnGluHisLeuIleGluLysTyrMetLeuLeuProAsnGlnValTrpAspSerIl 76969 : AGTACAAGAACATTTGATAGAAAAATACATGCTACTCCCTAATCAGGTTTGGGATAGCAT : 77028 669 : eIleGlnGlnAlaThrLys >>>> Target Intron 16 >>>> AsnValAspIl : 678 ||||||||||||||||||| 344 bp ||||||||||| eIleGlnGlnAlaThrLys++ ++AsnValAspIl 77029 : AATCCAACAGGCAACCAAAgt..........................agAATGTGGATAT : 77402 679 : eLeuLysAspProGluThrValLysGlnLeuGlySerIleLeuLysThrAsnValArgAl : 698 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| eLeuLysAspProGluThrValLysGlnLeuGlySerIleLeuLysThrAsnValArgAl 77403 : ACTTAAAGATCCTGAAACAGTCAAGCAGCTTGGtagcatattaaaaacaaatgtaagagC : 77462 699 : aCysLysAlaValGlyHisProPheValIleGlnLeuGlyArgIleTyrLeuAspMetLe : 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| aCysLysAlaValGlyHisProPheValIleGlnLeuGlyArgIleTyrLeuAspMetLe 77463 : CTGCAAAGCTGTTGGACATCCCTTTGTAATTCAACTTGGGAGAATTTATTTAGATATGCT : 77522 719 : uAsnValTyrLysCysLeuSerGluAsnIleSerAlaAlaIleGlnAlaAsn{G} >>> : 736 ||||||||||||||||||||||||||||||||||||||||||||||||||||{|} uAsnValTyrLysCysLeuSerGluAsnIleSerAlaAlaIleGlnAlaAsn{G}++ 77523 : TAATGTATACAAGTGCCTCAGTGAAAATATTTCTGCAGCTATCCAAGCTAAT{G}gt... : 77579 737 : > Target Intron 17 >>>> {ly}GluMetValThrLysGlnProLeuIleArgS : 747 2578 bp {||}||||||||||||||||||||||||||||||| ++{ly}GluMetValThrLysGlnProLeuIleArgS 77580 : .......................ag{GC}GAGATGGTTACAAAGCAGCCGTTAATTAGAA : 80187 748 : erMetArgThrValLysArgGluThrLeuLysLeuIleSerGlyTrpValSerArgSerA : 767 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| erMetArgThrValLysArgGluThrLeuLysLeuIleSerGlyTrpValSerArgSerA 80188 : GTATGCGAACAGTAAAAAGGGAAACTTTGAAGTTAATATCTGGCTGGGTGAGCAGATCGA : 80247 768 : snAspProGlnMet >>>> Target Intron 18 >>>> ValAlaGluAsnPheV : 777 |||||||||||||| 1647 bp |||||||||||||||| snAspProGlnMet++ ++ValAlaGluAsnPheV 80248 : ATGATCCACAGATGgt..........................aggTTGCTGAAAATTTTG : 81924 778 : alProProLeuLeuAspAlaValLeuIleAspTyrGlnArgAsnValProAlaAlaArgG : 797 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| alProProLeuLeuAspAlaValLeuIleAspTyrGlnArgAsnValProAlaAlaArgG 81925 : TTCCTCCTCTGTTGGATGCAGTTCTCATCGATTACCAGAGAAATGTTCCAGCTGCTAGAG : 81984 798 : luProGluValLeuSerThrMetAlaIleIleValAsnLysLeuGlyGlyHisIleThrA : 817 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| luProGluValLeuSerThrMetAlaIleIleValAsnLysLeuGlyGlyHisIleThrA 81985 : AACCAGAAGTGCTTAGTACTATGGCTATTATTGTCAACAAGTTAGGAGGACATATAACAG : 82044 818 : laGluIleProGlnIlePheAspAlaValPheGluCysThrLeuAsnMetIleAsnLys : 837 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| laGluIleProGlnIlePheAspAlaValPheGluCysThrLeuAsnMetIleAsnLys+ 82045 : CTGAAATACCTCAAATATTTGATGCTGTTTTTGAATGCACATTGAATATGATAAATAAGg : 82104 838 : >>>> Target Intron 19 >>>> AspPheGluGluTyrProGluHisArgThrA : 847 751 bp ||||||||||||||||||||||||||||||| + ++AspPheGluGluTyrProGluHisArgThrA 82105 : t..........................agGACTTTGAAGAATACCCTGAACACAGAACAA : 82885 848 : snPhePheLeuLeuLeuGlnAlaValAsnSerHisCysPheProAlaPheLeuAlaIleP : 867 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| snPhePheLeuLeuLeuGlnAlaValAsnSerHisCysPheProAlaPheLeuAlaIleP 82886 : ACTTTTTCTTACTACTTCAGGCTGTCAATTCTCATTGTTTCCCAGCATTCCTGGCTATTC : 82945 868 : roProThrGlnPheLysLeuValLeuAspSerIleIleTrpAlaPheLysHisThrMetA : 887 |||||.!!|||||||||||||||||||||||||||||||||||||||||||||||||||| roProAlaGlnPheLysLeuValLeuAspSerIleIleTrpAlaPheLysHisThrMetA 82946 : CACCTGCACAATTTAAACTTGTTTTGGATTCCATTATTTGGGCTTTCAAACATACTATGA : 83005 888 : rgAsnValAlaAspThr{G} >>>> Target Intron 20 >>>> {ly}LeuGln : 895 |||||||||||||||||{|} 659 bp {||}|||||| rgAsnValAlaAspThr{G}++ ++{ly}LeuGln 83006 : GGAATGTTGCAGATACa{g}gt..........................ag{GC}TTACAG : 83688 896 : IleLeuPheThrLeuLeuGlnAsnValAlaGlnGluGluAlaAlaAlaGlnSerPheTyr : 915 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| IleLeuPheThrLeuLeuGlnAsnValAlaGlnGluGluAlaAlaAlaGlnSerPheTyr 83689 : ATACTTTTTACACTCTTACAAAATGTTGCACAAGAAGAAGCTGCAGCTCAGAGTTTCTAT : 83748 916 : GlnThrTyrPheCysAspIleLeuGlnHisIlePheSerValValThrAspThrSerHis : 935 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlnThrTyrPheCysAspIleLeuGlnHisIlePheSerValValThrAspThrSerHis 83749 : CAGACTTATTTTTGTGATATTCTTCAGCATATCTTTTCTGTTGTGACAGACACCTCACAT : 83808 936 : ThrAla{G} >>>> Target Intron 21 >>>> {ly}LeuThrMetHisAlaSe : 944 ||||||{|} 79 bp {||}||||||||||||||||| ThrAla{G}++ ++{ly}LeuThrMetHisAlaSe 83809 : ACTGCT{G}gt..........................ag{GT}TTGACAATGCATGCATC : 83914 945 : rIleLeuAlaTyrMetPheAsnLeuValGluGluGlyLysIleSerThrSerLeuAsnPr : 964 ||||||||||||||||||||||||||||||||||||||||||||||||| !!|||||||| rIleLeuAlaTyrMetPheAsnLeuValGluGluGlyLysIleSerThrProLeuAsnPr 83915 : AATACTTGCATATATGTTTAATTTggttgaagaaggaaaaataagtacACCATTAAATCC : 83974 965 : oGlyAsnProValAsnAsnGlnIlePheLeuGlnGluTyrValAlaAsnLeuLeuLysSe : 984 ||||||||||||||||||||||!!:|||:!!||||||||||||||||||||||||||||| oGlyAsnProValAsnAsnGlnMetPheIleGlnGluTyrValAlaAsnLeuLeuLysSe 83975 : TGGAAATCCAGTTAACAACCAAATGTTCATTCAAGAATATGTGGCTAATCTTCTTAAATC : 84034 985 : rAlaPheProHisLeuGln{As} >>>> Target Intron 22 >>>> {p}AlaG : 993 |||||||||||||||||||{||} 80 bp {|}|||| rAlaPheProHisLeuGln{As}++ ++{p}AlaG 84035 : GGCATTCCCTCATCTACAA{GA}gt..........................ag{t}GCTC : 84141 994 : lnValLysLeuPheValThrGlyLeuPheSerLeuAsnGlnAspIleProAlaPheLysG : 1013 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| lnValLysLeuPheValThrGlyLeuPheSerLeuAsnGlnAspIleProAlaPheLysG 84142 : AAGTAAAGCTCTTTGTGACAGGGCTTTTCAGCTTAAATCAGGATATTCCAGCTTTCAAGG : 84201 1014 : luHisLeuArgAspPheLeuValGlnIleLys >>>> Target Intron 23 >>>> : 1024 |||||||||||||||||||||||||||||||| 959 bp luHisLeuArgAspPheLeuValGlnIleLys++ 84202 : AACATCTTAGGGATTTCCTAGTACAAATAAAGgt.......................... : 84236 1025 : GluPheAlaGlyGluAspThrSerAspLeuPheLeuGluGluArgGluIleAlaLeuA : 1043 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ++GluPheAlaGlyGluAspThrSerAspLeuPheLeuGluGluArgGluThrAlaLeuA 84237 : agGAGTTTGCAGGTGAAGATACATCTGACCTGTttttggaagaaagagaaacagcccTTC : 85250 1044 : rgGlnAlaAspGluGluLysHisLysArgGlnMetSerValProGlyIlePheAsnProH : 1063 ||||||||.!.|||||||||||||||! !|||||||||||||||||||||.!!||||||| rgGlnAlaGlnGluGluLysHisLysLeuGlnMetSerValProGlyIleLeuAsnProH 85251 : GACAGGCTCAGGAAGAGAAACATAAACTTCAAATGTCTGTCCCTGGCATCCTTAATCCAC : 85310 1064 : isGluIleProGluGluMetCysAsp : 1071 |||||||||||||||||||||||||| isGluIleProGluGluMetCysAsp 85311 : ATGAAATTCCAGAAGAAATGTGTGAT : 85336 vulgar: SPP00002947_2.0 0 1071 . JSZB01010493.1:subseq(34000,103292) 50478 85336 + 5317 M 42 126 5 0 2 I 0 4324 3 0 2 M 34 102 5 0 2 I 0 3483 3 0 2 M 24 72 S 0 1 5 0 2 I 0 10587 3 0 2 S 1 2 M 20 60 5 0 2 I 0 211 3 0 2 M 15 45 5 0 2 I 0 1133 3 0 2 M 60 180 S 0 2 5 0 2 I 0 874 3 0 2 S 1 1 M 16 48 5 0 2 I 0 72 3 0 2 M 40 120 5 0 2 I 0 1199 3 0 2 M 43 129 5 0 2 I 0 549 3 0 2 M 53 159 5 0 2 I 0 936 3 0 2 M 66 198 5 0 2 I 0 480 3 0 2 M 46 138 S 0 1 5 0 2 I 0 183 3 0 2 S 1 2 M 60 180 5 0 2 I 0 78 3 0 2 M 52 156 S 0 1 5 0 2 I 0 90 3 0 2 S 1 2 M 54 162 5 0 2 I 0 289 3 0 2 M 45 135 5 0 2 I 0 340 3 0 2 M 61 183 S 0 1 5 0 2 I 0 2574 3 0 2 S 1 2 M 35 105 5 0 2 I 0 1643 3 0 2 M 65 195 5 0 2 I 0 747 3 0 2 M 56 168 S 0 1 5 0 2 I 0 655 3 0 2 S 1 2 M 44 132 S 0 1 5 0 2 I 0 75 3 0 2 S 1 2 M 52 156 S 0 2 5 0 2 I 0 76 3 0 2 S 1 1 M 32 96 5 0 2 I 0 955 3 0 2 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-18 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local gene 50479 85336 5317 + . gene_id 1 ; sequence SPP00002947_2.0 ; gene_orientation + JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 50479 50604 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 50479 50604 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 50605 50606 . + . intron_id 1 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 50605 54932 . + . intron_id 1 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 54931 54932 . + . intron_id 0 ; splice_site "AG" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 54933 55034 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 54933 55034 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 55035 55036 . + . intron_id 2 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 55035 58521 . + . intron_id 2 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 58520 58521 . + . intron_id 1 ; splice_site "AG" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 58522 58594 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 58522 58594 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 58595 58596 . + . intron_id 3 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 58595 69185 . + . intron_id 3 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 69184 69185 . + . intron_id 2 ; splice_site "ag" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 69186 69247 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 69186 69247 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 69248 69249 . + . intron_id 4 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 69248 69462 . + . intron_id 4 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 69461 69462 . + . intron_id 3 ; splice_site "ag" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 69463 69507 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 69463 69507 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 69508 69509 . + . intron_id 5 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 69508 70644 . + . intron_id 5 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 70643 70644 . + . intron_id 4 ; splice_site "AG" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 70645 70826 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 70645 70826 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 70827 70828 . + . intron_id 6 ; splice_site "GC" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 70827 71704 . + . intron_id 6 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 71703 71704 . + . intron_id 5 ; splice_site "ag" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 71705 71753 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 71705 71753 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 71754 71755 . + . intron_id 7 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 71754 71829 . + . intron_id 7 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 71828 71829 . + . intron_id 6 ; splice_site "AG" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 71830 71949 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 71830 71949 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 71950 71951 . + . intron_id 8 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 71950 73152 . + . intron_id 8 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 73151 73152 . + . intron_id 7 ; splice_site "ag" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 73153 73281 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 73153 73281 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 73282 73283 . + . intron_id 9 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 73282 73834 . + . intron_id 9 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 73833 73834 . + . intron_id 8 ; splice_site "AG" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 73835 73993 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 73835 73993 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 73994 73995 . + . intron_id 10 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 73994 74933 . + . intron_id 10 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 74932 74933 . + . intron_id 9 ; splice_site "AG" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 74934 75131 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 74934 75131 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 75132 75133 . + . intron_id 11 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 75132 75615 . + . intron_id 11 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 75614 75615 . + . intron_id 10 ; splice_site "aG" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 75616 75754 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 75616 75754 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 75755 75756 . + . intron_id 12 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 75755 75941 . + . intron_id 12 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 75940 75941 . + . intron_id 11 ; splice_site "ag" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 75942 76123 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 75942 76123 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 76124 76125 . + . intron_id 13 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 76124 76205 . + . intron_id 13 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 76204 76205 . + . intron_id 12 ; splice_site "AG" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 76206 76362 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 76206 76362 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 76363 76364 . + . intron_id 14 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 76363 76456 . + . intron_id 14 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 76455 76456 . + . intron_id 13 ; splice_site "ag" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 76457 76620 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 76457 76620 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 76621 76622 . + . intron_id 15 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 76621 76913 . + . intron_id 15 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 76912 76913 . + . intron_id 14 ; splice_site "AG" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 76914 77048 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 76914 77048 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 77049 77050 . + . intron_id 16 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 77049 77392 . + . intron_id 16 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 77391 77392 . + . intron_id 15 ; splice_site "AG" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 77393 77576 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 77393 77576 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 77577 77578 . + . intron_id 17 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 77577 80154 . + . intron_id 17 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 80153 80154 . + . intron_id 16 ; splice_site "AG" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 80155 80261 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 80155 80261 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 80262 80263 . + . intron_id 18 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 80262 81908 . + . intron_id 18 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 81907 81908 . + . intron_id 17 ; splice_site "ag" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 81909 82103 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 81909 82103 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 82104 82105 . + . intron_id 19 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 82104 82854 . + . intron_id 19 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 82853 82854 . + . intron_id 18 ; splice_site "AG" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 82855 83023 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 82855 83023 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 83024 83025 . + . intron_id 20 ; splice_site "gt" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 83024 83682 . + . intron_id 20 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 83681 83682 . + . intron_id 19 ; splice_site "AG" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 83683 83817 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 83683 83817 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 83818 83819 . + . intron_id 21 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 83818 83896 . + . intron_id 21 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 83895 83896 . + . intron_id 20 ; splice_site "AG" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 83897 84056 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 83897 84056 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 84057 84058 . + . intron_id 22 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 84057 84136 . + . intron_id 22 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 84135 84136 . + . intron_id 21 ; splice_site "ag" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 84137 84233 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 84137 84233 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice5 84234 84235 . + . intron_id 23 ; splice_site "GT" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local intron 84234 85192 . + . intron_id 23 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local splice3 85191 85192 . + . intron_id 22 ; splice_site "AG" JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local cds 85193 85336 . + . JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local exon 85193 85336 . + . insertions 0 ; deletions 0 JSZB01010493.1:subseq(34000,103292) exonerate:protein2genome:local similarity 50479 85336 5317 + . alignment_id 1 ; Query SPP00002947_2.0 ; Align 50479 1 126 ; Align 54933 43 102 ; Align 58522 77 72 ; Align 69188 102 60 ; Align 69463 122 45 ; Align 70645 137 180 ; Align 71706 198 48 ; Align 71830 214 120 ; Align 73153 254 129 ; Align 73835 297 159 ; Align 74934 350 198 ; Align 75616 416 138 ; Align 75944 463 180 ; Align 76206 523 156 ; Align 76459 576 162 ; Align 76914 630 135 ; Align 77393 675 183 ; Align 80157 737 105 ; Align 81909 772 195 ; Align 82855 837 168 ; Align 83685 894 132 ; Align 83899 939 156 ; Align 84138 992 96 ; Align 85193 1024 144 # --- END OF GFF DUMP --- # -- completed exonerate analysis