TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00002947_2.0 # Protein # exportin 1 (XPO1) # Human (Homo sapiens) Length=1071 Score E Sequences producing significant alignments: (Bits) Value JSZB01010493.1 Manis javanica isolate MP_PG03-UM SCAFFOLD12323,... 133 6e-54 JSZB01012065.1 Manis javanica isolate MP_PG03-UM SCAFFOLD14308,... 42.4 0.15 JSZB01006885.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7914, ... 37.7 4.4 > JSZB01010493.1 Manis javanica isolate MP_PG03-UM SCAFFOLD12323, whole genome shotgun sequence Length=137292 Score = 133 bits (335), Expect(2) = 6e-54, Method: Compositional matrix adjust. Identities = 61/62 (98%), Positives = 62/62 (100%), Gaps = 0/62 (0%) Frame = +3 Query 461 LVYLTHLDYVDTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTV 520 +VYLTHLDYVDTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTV Sbjct 109938 VVYLTHLDYVDTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTV 110117 Query 521 IK 522 IK Sbjct 110118 IK 110123 Score = 104 bits (259), Expect(2) = 6e-54, Method: Compositional matrix adjust. Identities = 47/47 (100%), Positives = 47/47 (100%), Gaps = 0/47 (0%) Frame = +1 Query 528 CEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 574 CEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH Sbjct 110221 CEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 110361 Score = 110 bits (276), Expect(2) = 3e-36, Method: Compositional matrix adjust. Identities = 55/70 (79%), Positives = 60/70 (86%), Gaps = 5/70 (7%) Frame = +2 Query 927 FSVVTD-----TSHTAGLTMHASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANL 981 FSV+T S + GLTMHASILAYMFNLVEEGKIST LNPGNPVNNQ+F+QEYVANL Sbjct 117848 FSVITTWSL**CSLSTGLTMHASILAYMFNLVEEGKISTPLNPGNPVNNQMFIQEYVANL 118027 Query 982 LKSAFPHLQD 991 LKSAFPHLQ+ Sbjct 118028 LKSAFPHLQE 118057 Score = 68.2 bits (165), Expect(2) = 3e-36, Method: Compositional matrix adjust. Identities = 32/32 (100%), Positives = 32/32 (100%), Gaps = 0/32 (0%) Frame = +1 Query 992 AQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIK 1023 AQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIK Sbjct 118138 AQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIK 118233 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 65/69 (94%), Positives = 67/69 (97%), Gaps = 0/69 (0%) Frame = +1 Query 350 ALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDVPPRRQLY 409 ALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDVPPRRQLY Sbjct 108934 ALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDVPPRRQLY 109113 Query 410 LPMLFKVRL 418 LP+L KV + Sbjct 109114 LPVLSKVTM 109140 Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 65/65 (100%), Positives = 65/65 (100%), Gaps = 0/65 (0%) Frame = +1 Query 772 VAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTL 831 VAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTL Sbjct 115909 VAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTL 116088 Query 832 NMINK 836 NMINK Sbjct 116089 NMINK 116103 Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 62/65 (95%), Positives = 65/65 (100%), Gaps = 0/65 (0%) Frame = +3 Query 673 TKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAI 732 ++NVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAI Sbjct 111387 SQNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAI 111566 Query 733 QANGE 737 QANG+ Sbjct 111567 QANGK 111581 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 60/63 (95%), Positives = 62/63 (98%), Gaps = 0/63 (0%) Frame = +2 Query 134 LVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKSKH 193 L+ ILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVK+KH Sbjct 104636 LL*ILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKH 104815 Query 194 LKD 196 LKD Sbjct 104816 LKD 104824 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 56/57 (98%), Positives = 56/57 (98%), Gaps = 0/57 (0%) Frame = +2 Query 837 DFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTG 893 DFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPP QFKLVLDSIIWAFKHTMRNVADTG Sbjct 116855 DFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTG 117025 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 60/70 (86%), Positives = 65/70 (93%), Gaps = 2/70 (3%) Frame = +2 Query 561 FLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINT 620 FL +++N +F + ETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINT Sbjct 110420 FLNSLIN-IFVLL-ETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINT 110593 Query 621 IICDLQPQQV 630 IICDLQPQQV Sbjct 110594 IICDLQPQQV 110623 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 53/55 (96%), Positives = 53/55 (96%), Gaps = 0/55 (0%) Frame = +3 Query 296 QMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHDQLIEKRLNLRETLMEA 350 QMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEH QLIEKRLNLRETLME Sbjct 107832 QMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRLNLRETLMEV 107996 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 46/46 (100%), Positives = 46/46 (100%), Gaps = 0/46 (0%) Frame = +1 Query 629 QVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATK 674 QVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATK Sbjct 110911 QVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATK 111048 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 46/46 (100%), Positives = 46/46 (100%), Gaps = 0/46 (0%) Frame = +1 Query 893 GLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAG 938 GLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAG Sbjct 117682 GLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAG 117819 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 46/46 (100%), Positives = 46/46 (100%), Gaps = 0/46 (0%) Frame = +2 Query 416 VRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETL 461 VRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETL Sbjct 109616 VRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETL 109753 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 44/48 (92%), Positives = 44/48 (92%), Gaps = 0/48 (0%) Frame = +3 Query 1024 EFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGIFNPHEIPEEMCD 1071 EFAGEDTSDLFLEERE ALRQA EEKHK QMSVPGI NPHEIPEEMCD Sbjct 119193 EFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEEMCD 119336 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 42/42 (100%), Positives = 42/42 (100%), Gaps = 0/42 (0%) Frame = +2 Query 1 MPAIMTMLADHAARQLLDFSQKLDINLLDNVVNCLYHGEGAQ 42 MPAIMTMLADHAARQLLDFSQKLDINLLDNVVNCLYHGEGAQ Sbjct 84479 MPAIMTMLADHAARQLLDFSQKLDINLLDNVVNCLYHGEGAQ 84604 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 43/45 (96%), Positives = 45/45 (100%), Gaps = 0/45 (0%) Frame = +2 Query 254 FLNVPMFRNVSLKCLTEIAGVSVSQYEEQFVTLFTLTMMQLKQML 298 FLNVPMFRNVSLKCLTEIAGVSVSQYEEQFVTLFTLTMMQLKQ++ Sbjct 107153 FLNVPMFRNVSLKCLTEIAGVSVSQYEEQFVTLFTLTMMQLKQVI 107287 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 40/40 (100%), Positives = 40/40 (100%), Gaps = 0/40 (0%) Frame = +2 Query 214 ENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYK 253 ENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYK Sbjct 105830 ENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYK 105949 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 38/39 (97%), Positives = 39/39 (100%), Gaps = 0/39 (0%) Frame = +1 Query 736 GEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAE 774 GEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMV+E Sbjct 114154 GEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVSE 114270 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 35/35 (100%), Positives = 35/35 (100%), Gaps = 0/35 (0%) Frame = +1 Query 42 QQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTK 76 QQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTK Sbjct 88930 QQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTK 89034 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/32 (84%), Positives = 29/32 (91%), Gaps = 0/32 (0%) Frame = +2 Query 74 NTKYYGLQILENVIKTRWKILPRNQCEGIKKY 105 N +YYGLQILENVIKTRWKILPRNQCEG K + Sbjct 92513 NFQYYGLQILENVIKTRWKILPRNQCEGRKMF 92608 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/21 (100%), Positives = 21/21 (100%), Gaps = 0/21 (0%) Frame = +3 Query 101 GIKKYVVGLIIKTSSDPTCVE 121 GIKKYVVGLIIKTSSDPTCVE Sbjct 103185 GIKKYVVGLIIKTSSDPTCVE 103247 Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust. Identities = 18/27 (67%), Positives = 23/27 (85%), Gaps = 0/27 (0%) Frame = +1 Query 197 SMCNEFSQIFQLCQFVMENSQNAPLVH 223 SMCNEFSQIFQLCQFVM ++ N+ ++ Sbjct 105703 SMCNEFSQIFQLCQFVMVSAFNSVFLN 105783 > JSZB01012065.1 Manis javanica isolate MP_PG03-UM SCAFFOLD14308, whole genome shotgun sequence Length=250116 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 44/201 (22%), Positives = 85/201 (42%), Gaps = 19/201 (9%) Frame = -2 Query 45 MAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKK 104 +AQ+ L + P AW +L+ + +Y+G L I W +P +Q E +K Sbjct 178262 LAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKA 178083 Query 105 YVVGLIIKTSSDPTC-VEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSES- 162 + I TC K+ + +L + L + P WP ++D+V + +S Sbjct 178082 QLFTQI-------TCFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSP 177924 Query 163 -----LCQNNMVILKLLSEEVFDFSSGQITQVKSKHLKDSMCNEFSQIFQLCQFVMENSQ 217 C + +L +L EE F + ++ Q + ++ S+ E +F L + +++ Sbjct 177923 VDGQGRCLALLELLTVLPEE---FQTSRLPQYRKGLVRASLAVECGAVFPLLEQLLQQPS 177753 Query 218 NAPLVHATLETLLRFLNWIPL 238 + V + L F +W+ L Sbjct 177752 SPSCVRQ--KVLKCFSSWVQL 177696 > JSZB01006885.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7914, whole genome shotgun sequence Length=249011 Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/53 (34%), Positives = 29/53 (55%), Gaps = 0/53 (0%) Frame = +3 Query 726 ENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVP 778 +I+ ++Q E VTK PL S + + R + G VS S DP ++A + +P Sbjct 20400 HSIAPSLQRPSETVTKAPLSTSSQGITRVNAVITCGSVSSSQDPDIIAPHLLP 20558 Lambda K H a alpha 0.322 0.136 0.402 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 778196772405 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40