Command line: [exonerate -m p2g --showtargetgff -q TXNRD3.fa -t TXNRD3.subseq] Hostname: [ws101069u] C4 Alignment: ------------ Query: SPP00000141_2.0 # Protein # Thioredoxin reductase 3 (TXNRD3) # Human Target: JSZB01000602.1:subseq(80000,84803) Manis javanica isolate MP_PG03-UM SCAFFOLD674, whole genome shotgun sequence Model: protein2genome:local Raw score: 2388 Query range: 45 -> 633 Target range: 6248 -> 82445 46 : ProGlyArgAlaArgSerGluSerGluThrLeuGluArgSerProProGlnSerProGly : 65 ||||||||||||||||||..! !! ! !! !! ||||||||| ! !! !!!.! ProGlyArgAlaArgSerSerArgProProThrAlaArgSerProGlyCysProAlaAla 6249 : CCAGGCCGCGCTCGCTCGTCGCGCCCGCCGACGGCCCGCTCACCCGGATGCCCTGCAGCA : 6306 66 : ProGlyLysAlaGlyAspAlaProAsnArgArgSerGly<->HisValArgGlyAlaArg : 84 |||||| ||| ! !! !||| !|||!:!!!! ! ! !||||||:!!!:! ProGlyProAlaProHisHisProPheArgLysThrProCysGlyProArgGlySerGln 6307 : CCCGGACCCGCTCCTCATCATCCGTTCCGAAAGACACCCTGCGGCCCTCGCGGCTCTCAG : 6366 85 : ValLeuSerProProGlyArgArgAlaArgLeuSerSerProGlyProSerArgSerSer : 104 !! ! !! !! !! ! !!!! !!:! !:!!!!!|||!.! !||||||:!!!!! CysSerPro***GlnGluAlaSerGlnGlnAlaAlaThrProAlaGlySerArgAlaThr 6367 : TGCTCCCCATAGCAGGAAGCGAGCCAGCAAGCGGCCACGCCAGCCGGCTCCAGAGCAACC : 6426 105 : GluAlaArgGluGluLeuArgArgHisLeuValGlyLeuIleGlu >>>> Target I : 120 ..! !! ! !...! ! !! !! !!.! !! !.!!:!! 2698 ArgGlnThrProSerCysGlyAlaLeuSerAlaGlnArgPheGln+- 6427 : AGACAGACGCCGAGCTGTGGCGCTCTGAGCGCACAACGCTTCCAGgg............. : 6476 121 : ntron 1 >>>> ArgSerArgValValIlePheSerLysSerTyrCysProHisSerT : 135 4 bp !!!:!||||||:!!:!!|||||||||||||||||||||||||||| ++GlyAsnArgValMetValPheSerLysSerTyrCysProHisSerT 6477 : ............agGGCAACCGAGTGATGGTCTTCAGCAAGAGTTACTGCCCGCACAGCA : 33503 136 : hrArg >>>> Target Intron 2 >>>> ValLysGluLeuPheSerSerLeuGl : 145 ||||| 17502 bp |||||||||||||||||||||||||| hrArg++ ++ValLysGluLeuPheSerSerLeuGl 33504 : CGCGGgt.........................agGTCAAAGAACTCTTTTCTTCCTTGGG : 51035 146 : yValGluCysAsnValLeuGluLeuAspGlnVal{A} >>>> Target Intron 3 : 157 ||||||||||||||||||||||||||||!:!|||{|} 1300 bp yValGluCysAsnValLeuGluLeuAspArgVal{A}++ 51036 : AGTTGAATGTAATGTCTTGGAACTTGATCGAGTC{G}gt..................... : 51074 158 : >>>> {sp}AspGlyAlaArgValGlnGluValLeuSerGluIleThrAsnGlnLysTh : 174 {||}|||||||||!.!|||||||||||||||||||||||||||||||||!:!|| ++{sp}AspGlyAlaAsnValGlnGluValLeuSerGluIleThrAsnGlnArgTh 51075 : ....ag{AT}GATGGGGCCAATGTTCAAGAAGTACTGTCGGAGATCACTAATCAGAGAAC : 52422 175 : rValProAsnIlePheValAsnLysValHisValGlyGlyCysAspGlnThrPheGln : 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| rValProAsnIlePheValAsnLysValHisValGlyGlyCysAspGlnThrPheGln++ 52423 : CGTGCCCAatatttttgtgaataaagtGCATGTGGGTGGATGTGACCAAACCTTCCAGgt : 52482 195 : >>>> Target Intron 4 >>>> AlaTyrGlnSerGlyLeuLeuGlnLysLeuLeu : 204 1725 bp |||:!!||||||||||||||||||||||||||| ++AlaHisGlnSerGlyLeuLeuGlnLysLeuLeu 52483 : .........................agGCACACCAGAGTGGCCTGTTACAGAAGCTCCTT : 54237 205 : GlnGluAspLeuAlaTyrAspTyrAspLeuIleIleIleGlyGlyGlySerGlyGlyLeu : 224 ||||||||| !:!!||||||!:!|||||||||:!!:!!||||||||||||||||||||| GlnGluAspThrSerTyrAspPheAspLeuIleValLeuGlyGlyGlySerGlyGlyLeu 54238 : CAGGAAGACACGTCATACGATTTTGACCTCATTGTCCTTGGCGGTGGTTCAGGTGGCCTC : 54297 225 : SerCysAlaLys >>>> Target Intron 5 >>>> GluAlaAlaIleLeuGlyL : 235 :!!||||||:!! 243 bp ||||||||||||||||||| AlaCysAlaGln++ ++GluAlaAlaIleLeuGlyL 54298 : GCATGTGCTCAGgt.........................agGAAGCTGCCATTTTGGGAA : 54573 236 : ysLysValMetValLeuAspPheValValProSerProGlnGlyThrSerTrp{G} >> : 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||{|} ysLysValMetValLeuAspPheValValProSerProGlnGlyThrSerTrp{G}++ 54574 : AGAAAGTCATGGTGCTGGACTTTGTGGTCCCATCCCCTCAGGGCACCTCCTGG{G}gt.. : 54630 254 : >> Target Intron 6 >>>> {ly}LeuGlyGlyThrCysValAsnValGlyCysI : 264 1656 bp {||}||||||||||||||||||||||||||||||| ++{ly}LeuGlyGlyThrCysValAsnValGlyCysI 54631 : .......................ag{gg}cTTGGCGGTACTTGTGTAAATGTGGGCTGTA : 56316 265 : leProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnAlaLeuCysAspSerArgL : 284 ||||||||||||||||||||||||||||||||||||||||||||||| !|||||||||| leProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnAlaLeuThrAspSerArgL 56317 : TTCCTAAGAAACTGATGCACCAGGCTGCCCTTCTGGGGCAGGCATTAACTGACTCAAGGA : 56376 285 : ysPheGlyTrpGluTyrAsnGlnGln{V} >>>> Target Intron 7 >>>> {a : 293 ||||||||||||||||||||||||||{|} 4684 bp {| ysPheGlyTrpGluTyrAsnGlnGln{V}++ ++{a 56377 : AGTTTGGCTGGGAGTATAATCAGCAA{G}gt.........................ag{t : 61088 294 : l}ArgHisAsnTrpGluThrMetThrLysAlaIleGlnAsnHisIleSerSerLeuAsnT : 313 |}:::|||||||||||||||||||||:!!||||||||||||||||||.!!|||||||||| l}LysHisAsnTrpGluThrMetThrGluAlaIleGlnAsnHisIleGlySerLeuAsnT 61089 : g}aagCACAACTGGGAGACCATGACAGAAGCAATTCAAAACCACATCGGCTCTCTAAATT : 61147 314 : rpGlyTyrArgLeuSerLeuArgGluLysAlaValAlaTyrValAsnSerTyrGlyGluP : 333 ||.!!||||||||||||||||||||||||:!!|||||||||:!!|||||||||||||||| rpSerTyrArgLeuSerLeuArgGluLysSerValAlaTyrIleAsnSerTyrGlyGluP 61148 : GGAGCTACAGGTTGTCTTTGAGGGAGAAGTCTGTGGCCTATATCAATTCCTATGGAGAAT : 61207 334 : heValGluHisHisLysIleLys >>>> Target Intron 8 >>>> AlaThrAs : 343 |||||||||||||||||:!!||| 1546 bp |||||||| heValGluHisHisLysLeuLys++ ++AlaThrAs 61208 : TTGTCGAGCATCATAAATTAAAGgt.........................aggcaaCCAA : 62783 344 : nLysLysGlyGlnGluThrTyrTyrThrAlaAlaGlnPheValIleAlaThrGlyGluAr : 363 |!:!|||||||||||||||! !||||||||||||:!!||||||||||||||||||||||| nArgLysGlyGlnGluThrCysTyrThrAlaAlaLysPheValIleAlaThrGlyGluAr 62784 : TAGAAAAGGACAGGAAACTTGTTATACAGCTGCAAAATTTGTCATAGCAACAGGTGAAAG : 62843 364 : gProArgTyrLeuGlyIleGlnGlyAspLysGluTyrCysIleThr{Se} >>>> Tar : 379 |||||||||||||||||||! !||||||||||||||||||||||||{||} gProArgTyrLeuGlyIleProGlyAspLysGluTyrCysIleThr{Se}++ 62844 : GCCACGATACTTAGGAATCCCAGGAGATAAAGAATACTGCATTACT{AG}gt........ : 62895 380 : get Intron 9 >>>> {r}AspAspLeuPheSerLeuProTyrCysProGlyLysTh : 392 726 bp {|}|||||||||||||||||||||||||||||||||||||| ++{r}AspAspLeuPheSerLeuProTyrCysProGlyLysTh 62896 : .................ag{c}gatgaccttttttctctgccttactGCCCTGGCAAGAC : 63656 393 : rLeuValValGlyAlaSerTyrValAlaLeuGluCysAlaGlyPheLeuAlaGlyPheGl : 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||.!!|| rLeuValValGlyAlaSerTyrValAlaLeuGluCysAlaGlyPheLeuAlaGlyLeuGl 63657 : GTTAGTAGTGGGTGCGTCTTACGTTGCCCTGGAATGTGCAGGGTTTCTCGCTGGCCTTGG : 63716 413 : yLeuAspValThrValMetValArgSerIleLeuLeuArgGlyPheAspGlnGluMetAl : 432 |||||||||||||:!!|||||||||||||||||||||||||||||||||||||||||||| yLeuAspValThrIleMetValArgSerIleLeuLeuArgGlyPheAspGlnGluMetAl 63717 : CTTAGATGTCACGATTATGGTGCGCTCAATCCTTCTCCGTGGCTTTGATCAAGAAATGGC : 63776 433 : aGluLysValGlySerTyrMetGluGlnHisGlyValLysPheLeuArgLysPheIlePr : 452 ||||||||||||||||||||||||||||:!!||||||||||||:!!|||||||||:!:|| aGluLysValGlySerTyrMetGluGlnTyrGlyValLysPheIleArgLysPheValPr 63777 : AGAGAAAGTGGGTTCCTACATGGAACAATATGGTGTTAAGTTCATAAGAAAATTTGTGCC : 63836 453 : oValMet >>>> Target Intron 10 >>>> ValGlnGlnLeuGluLysGlySe : 462 ||||||| 1118 bp ||||||||||||||||||||||| oValMet++ ++ValGlnGlnLeuGluLysGlySe 63837 : TGTGATGgt..........................agGTTCAACAGTTGGAGAAAGGTTC : 64984 463 : rProGlyLysLeuLysValLeuAlaLysSerThrGluGlyThrGluThrIleGluGlyVa : 482 |||||||||||||||||||:!!|||||||||||||||||| !!||||||!!:|||||||| rProGlyLysLeuLysValValAlaLysSerThrGluGlyProGluThrMetGluGlyVa 64985 : ACCTGGAAAGCTGAAAGTGGTGGCTAAATCCACTGAGGGACCAGAAACTATGGAAGGCGT : 65044 483 : lTyrAsnThr >>>> Target Intron 11 >>>> ValLeuLeuAlaIleGlyAr : 492 |||||||||| 4946 bp ||||||||||||:!!||||| lTyrAsnThr++ ++ValLeuLeuAlaValGlyAr 65045 : ATACAACACAgt..........................agGTTTTGTTAGCAGTTGGTCG : 70020 493 : gAspSerCysThrArgLysIleGlyLeuGluLysIleGlyValLysIleAsnGlu{Ly} : 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||{:!} gAspSerCysThrArgLysIleGlyLeuGluLysIleGlyValLysIleAsnGlu{Gl}+ 70021 : TGACTCCTGTACAAGGAAAATAGGCTTGGAGAAGATTGGTGTCAAAATCAATGAG{CA}g : 70079 512 : >>>> Target Intron 12 >>>> {s}SerGlyLysIleProValAsnAspValG : 521 570 bp {!}||||||||||||||||||||||||:!!| + ++{n}SerGlyLysIleProValAsnAspMetG 70080 : t..........................ag{G}AGTGGCAAAATACCAGTAAATGACATGG : 70677 522 : luGlnThrAsnValProTyrValTyrAlaValGlyAspIleLeuGluAspLysProGluL : 541 |||||||||||||||||||||||||||||:!!|||||||||||||||! !||| !|||| luGlnThrAsnValProTyrValTyrAlaIleGlyAspIleLeuGluGlyLysIleGluL 70678 : AGCAGACCAACGTGCCCTATGTTTATGCTATTGGAGATATTCTGGAGGGTAAAATCGAGC : 70737 542 : euThrProValAlaIleGlnSerGlyLysLeuLeuAlaGlnArgLeuPheGlyAlaSerL : 561 ||||||||||||||||||||:!!|||||||||||||||!:!||||||||||||!.! !!| euThrProValAlaIleGlnAlaGlyLysLeuLeuAlaArgArgLeuPheGlyGlyArgL 70738 : TCACTCCCGTTGCCATACAGGCAGGCAAGCTGCTAGCTCGAAGACTTTTTGGGGGCCGTT : 70797 562 : euGluLys >>>> Target Intron 13 >>>> CysAspTyrIleAsnValProT : 571 |||||||| 3304 bp |||||||||! !!:!||||||| euGluLys++ ++CysAspTyrThrSerValProT 70798 : TGGAAAAGgt..........................agTGTGATTATACTAGTGTTCCAA : 74131 572 : hrThrValPheThrProLeuGluTyrGlyCysCysGlyLeuSerGluGluLysAlaIleG : 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| hrThrValPheThrProLeuGluTyrGlyCysCysGlyLeuSerGluGluLysAlaIleG 74132 : CAACAGTGTTTACTCCTTTGGAATATGGCTGCTGTGGATTATCTGAAGAGAAAGCTattg : 74191 592 : luValTyrLysLysGluAsnLeuGlu >>>> Target Intron 14 >>>> IleT : 601 ||:::|||:::||||||||||||||| 8126 bp :!!! luMetTyrGlnLysGluAsnLeuGlu++ ++ValP 74192 : aaatgtatcaaaaagaGAATCTAGAGgt..........................agGTAT : 82347 602 : yrHisThrLeuPheTrpProLeuGluTrpThrValAlaGlyArgGluAsnAsnThrCysT : 621 :!||||||||||||||||||||||||||||||||||||||||||!!:||||||||||||| heHisThrLeuPheTrpProLeuGluTrpThrValAlaGlyArgAspAsnAsnThrCysT 82348 : TCCATACTTTGTTCTGGCCTCTTGAATGGACAGTAGCTGGCAGAGACAACAATACTTGTT : 82407 622 : yrAlaLysIleIleCysAsnLysPheAspHisAspArg : 633 ||.!!||||||||||||||||||! !|||:!!! ||| yrThrLysIleIleCysAsnLysSerAspAsnValArg 82408 : ACACAAAGATAATTTGCAATAAATCCGACAATGTACGT : 82445 vulgar: SPP00000141_2.0 45 633 . JSZB01000602.1:subseq(80000,84803) 6248 82445 + 2388 M 33 99 G 0 3 M 41 123 5 0 2 I 0 26980 3 0 2 M 17 51 5 0 2 I 0 17498 3 0 2 M 20 60 S 0 1 5 0 2 I 0 1296 3 0 2 S 1 2 M 36 108 5 0 2 I 0 1721 3 0 2 M 35 105 5 0 2 I 0 239 3 0 2 M 24 72 S 0 1 5 0 2 I 0 1652 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 4680 3 0 2 S 1 2 M 47 141 5 0 2 I 0 1542 3 0 2 M 38 114 S 0 2 5 0 2 I 0 722 3 0 2 S 1 1 M 75 225 5 0 2 I 0 1114 3 0 2 M 31 93 5 0 2 I 0 4942 3 0 2 M 25 75 S 0 2 5 0 2 I 0 566 3 0 2 S 1 1 M 52 156 5 0 2 I 0 3300 3 0 2 M 36 108 5 0 2 I 0 8122 3 0 2 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-14 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local gene 6249 82445 2388 + . gene_id 1 ; sequence SPP00000141_2.0 ; gene_orientation + JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local cds 6249 6473 . + . JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local exon 6249 6473 . + . insertions 3 ; deletions 0 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice5 6474 6475 . + . intron_id 1 ; splice_site "GG" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local intron 6474 33457 . + . intron_id 1 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice3 33456 33457 . + . intron_id 0 ; splice_site "AG" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local cds 33458 33508 . + . JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local exon 33458 33508 . + . insertions 0 ; deletions 0 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice5 33509 33510 . + . intron_id 2 ; splice_site "GT" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local intron 33509 51010 . + . intron_id 2 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice3 51009 51010 . + . intron_id 1 ; splice_site "AG" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local cds 51011 51071 . + . JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local exon 51011 51071 . + . insertions 0 ; deletions 0 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice5 51072 51073 . + . intron_id 3 ; splice_site "GT" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local intron 51072 52371 . + . intron_id 3 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice3 52370 52371 . + . intron_id 2 ; splice_site "AG" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local cds 52372 52481 . + . JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local exon 52372 52481 . + . insertions 0 ; deletions 0 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice5 52482 52483 . + . intron_id 4 ; splice_site "GT" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local intron 52482 54206 . + . intron_id 4 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice3 54205 54206 . + . intron_id 3 ; splice_site "AG" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local cds 54207 54311 . + . JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local exon 54207 54311 . + . insertions 0 ; deletions 0 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice5 54312 54313 . + . intron_id 5 ; splice_site "GT" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local intron 54312 54554 . + . intron_id 5 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice3 54553 54554 . + . intron_id 4 ; splice_site "AG" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local cds 54555 54627 . + . JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local exon 54555 54627 . + . insertions 0 ; deletions 0 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice5 54628 54629 . + . intron_id 6 ; splice_site "GT" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local intron 54628 56283 . + . intron_id 6 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice3 56282 56283 . + . intron_id 5 ; splice_site "ag" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local cds 56284 56403 . + . JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local exon 56284 56403 . + . insertions 0 ; deletions 0 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice5 56404 56405 . + . intron_id 7 ; splice_site "GT" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local intron 56404 61087 . + . intron_id 7 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice3 61086 61087 . + . intron_id 6 ; splice_site "ag" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local cds 61088 61230 . + . JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local exon 61088 61230 . + . insertions 0 ; deletions 0 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice5 61231 61232 . + . intron_id 8 ; splice_site "GT" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local intron 61231 62776 . + . intron_id 8 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice3 62775 62776 . + . intron_id 7 ; splice_site "ag" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local cds 62777 62892 . + . JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local exon 62777 62892 . + . insertions 0 ; deletions 0 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice5 62893 62894 . + . intron_id 9 ; splice_site "GT" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local intron 62893 63618 . + . intron_id 9 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice3 63617 63618 . + . intron_id 8 ; splice_site "ag" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local cds 63619 63844 . + . JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local exon 63619 63844 . + . insertions 0 ; deletions 0 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice5 63845 63846 . + . intron_id 10 ; splice_site "GT" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local intron 63845 64962 . + . intron_id 10 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice3 64961 64962 . + . intron_id 9 ; splice_site "AG" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local cds 64963 65055 . + . JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local exon 64963 65055 . + . insertions 0 ; deletions 0 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice5 65056 65057 . + . intron_id 11 ; splice_site "GT" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local intron 65056 70001 . + . intron_id 11 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice3 70000 70001 . + . intron_id 10 ; splice_site "AG" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local cds 70002 70078 . + . JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local exon 70002 70078 . + . insertions 0 ; deletions 0 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice5 70079 70080 . + . intron_id 12 ; splice_site "GT" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local intron 70079 70648 . + . intron_id 12 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice3 70647 70648 . + . intron_id 11 ; splice_site "AG" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local cds 70649 70805 . + . JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local exon 70649 70805 . + . insertions 0 ; deletions 0 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice5 70806 70807 . + . intron_id 13 ; splice_site "GT" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local intron 70806 74109 . + . intron_id 13 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice3 74108 74109 . + . intron_id 12 ; splice_site "AG" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local cds 74110 74217 . + . JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local exon 74110 74217 . + . insertions 0 ; deletions 0 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice5 74218 74219 . + . intron_id 14 ; splice_site "GT" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local intron 74218 82343 . + . intron_id 14 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local splice3 82342 82343 . + . intron_id 13 ; splice_site "AG" JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local cds 82344 82445 . + . JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local exon 82344 82445 . + . insertions 0 ; deletions 0 JSZB01000602.1:subseq(80000,84803) exonerate:protein2genome:local similarity 6249 82445 2388 + . alignment_id 1 ; Query SPP00000141_2.0 ; Align 6249 46 99 ; Align 6351 79 123 ; Align 33458 120 51 ; Align 51011 137 60 ; Align 52374 158 108 ; Align 54207 194 105 ; Align 54555 229 72 ; Align 56286 254 117 ; Align 61090 294 141 ; Align 62777 341 114 ; Align 63620 380 225 ; Align 64963 455 93 ; Align 70002 486 75 ; Align 70650 512 156 ; Align 74110 564 108 ; Align 82344 600 102 # --- END OF GFF DUMP --- # -- completed exonerate analysis