Command line: [exonerate -m p2g --showtargetgff -q TXNRD2.fa -t TXNRD2.subseq] Hostname: [ws101069u] C4 Alignment: ------------ Query: SPP00000137_2.0 # Protein # Thioredoxin reductase 2 (TXNRD2) # Human Target: JSZB01015288.1:subseq(490000,135000) Manis javanica isolate MP_PG03-UM SCAFFOLD18446, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 2171 Query range: 4 -> 494 Target range: 89154 -> 48283 5 : AlaGlyGlnArgAspTyrAspLeuLeuValValGlyGlyGlySerGlyGlyLeuAlaCys : 24 |||||||||!:!||||||||||||||||||:!!||||||||||||||||||||||||||| AlaGlyGlnGlnAspTyrAspLeuLeuValIleGlyGlyGlySerGlyGlyLeuAlaCys 89154 : GCAGGCCAGCAGGACTATGATCTTCTGGTGATTGGCGGGGGATCCGGTGGCCTGGCCTGT : 89097 25 : AlaLysGlu{A} >>>> Target Intron 1 >>>> {la}AlaGlnLeuGlyArg : 33 |||||||||{|} 6318 bp {||}||||||||||||!:! AlaLysGlu{A}++ ++{la}AlaGlnLeuGlyLys 89096 : GCCAAGGAA{G}gt.........................ag{CT}GCTCAGCTGGGAAAG : 82752 34 : LysValAlaValValAspTyrValGluProSerProGln{G} >>>> Target Intr : 47 ||||||||||||||||||||||||||||||||||||!:!{|} 229 bp LysValAlaValValAspTyrValGluProSerProArg{G}++ 82751 : AAGGTGGCCGTCGTAGACTACGTGGAGCCTTCCCCCCGA{G}gt................ : 82707 48 : on 2 >>>> {ly}ThrArgTrpGlyLeuGlyGlyThrCysValAsnValGlyCysIle : 62 {||}|||! !||||||||||||||||||||||||||||||||||||||| ++{ly}ThrThrTrpGlyLeuGlyGlyThrCysValAsnValGlyCysIle 82706 : .........ag{GG}ACCACGTGGGGCCTCGGCGGCACCTGTGTGAACGTCGGCTGCATC : 82436 63 : ProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlyLeuIleGlnAspAlaProAsn : 82 |||||||||||||||||||||||||||||||||||| !:!!|||!:!|||||||||:!! ProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyThrMetIleArgAspAlaProHis 82435 : CCCAAGAAGCTGATGCACCAGGCAGCACTGCTGGGGACCATGATCCGAGACGCCCCCCAC : 82376 83 : TyrGlyTrpGluValAlaGlnProValProHisAsp{Tr} >>>> Target Intron : 95 ||||||||||||:!!|||||||||..!||||||..!{||} 521 bp TyrGlyTrpGluLeuAlaGlnProThrProHisSer{Tr}++ 82375 : TATGGCTGGGAGTTGGCCCAGCCGACTCCACACAGC{TG}gt.................. : 82333 96 : 3 >>>> {p}ArgLysMetAlaGluAlaValGlnAsnHisValLysSerLeuAsnTrp : 111 {|}|||||||||||||||||||||||||||||||||||||||||||||||| ++{p}ArgLysMetAlaGluAlaValGlnAsnHisValLysSerLeuAsnTrp 82332 : .......ag{G}AGGAAGATGGCAGAGGCCGTTCAAAACCACGTGAAGTCCCTGAACTGG : 81768 112 : GlyHisArgValGlnLeuGlnAsp{Ar} >>>> Target Intron 4 >>>> {g} : 120 ||||||||||||||||||||||||{||} 1669 bp {|} GlyHisArgValGlnLeuGlnAsp{Ar}++ ++{g} 81767 : GGGCACCGGGTGCAGCTGCAGGAC{AG}gt.........................ag{A} : 80070 121 : LysValLysTyrPheAsnIleLysAlaSerPheValAspGluHisThrValCysGlyVal : 140 ||||||||||||||||||||||||||||||||||||:!!:!!||||||||| !!|||||| LysValLysTyrPheAsnIleLysAlaSerPheValAsnLysHisThrValArgGlyVal 80069 : AAAGTCAAGTACTTTAACATCAAGGCCAGCTTTGTCAACAAGCACACAGTTCGTGGTGTC : 80012 141 : AlaLysGlyGlyLysGlu >>>> Target Intron 5 >>>> IleLeuLeuSerA : 151 .!!|||! !||||||||| 511 bp ! !|||||||||| ThrLysAspGlyLysGlu++ ++ThrLeuLeuSerA 80011 : ACAAAGGATGGGAAGGAGgt.........................agACTCTGCTTTCGG : 79468 152 : laAspHisIleIleIleAlaThrGlyGlyArgProArgTyrProThrHis >>>> Tar : 168 ||!!:||||||:!!||||||||||||||||||||||||||||||! !||| laGluHisIleValIleAlaThrGlyGlyArgProArgTyrProMetHis++ 79467 : CTGAGCACATCGTCATTGCTACTGGAGGGCGGCCGAGGTACCCCATGCACgt........ : 79415 169 : get Intron 6 >>>> IleGluGlyAlaLeuGluTyrGlyIleThrSerAspAspIl : 181 3379 bp :!!|||||||||||||||||||||||||||||||||||||| ++ValGluGlyAlaLeuGluTyrGlyIleThrSerAspAspIl 79414 : .................agGTTGAAGGTGCTTTGGAATATGGAATCACAAGTGACGACAT : 75999 182 : ePheTrpLeuLysGluSerProGlyLys{Th} >>>> Target Intron 7 >>>> : 191 ||||||||||||||||||||||||||||{||} 7807 bp ePheTrpLeuLysGluSerProGlyLys{Th}++ + 75998 : CTTCTGGCTGAAGGAATCCCCTGGAAAA{AC}gt.........................a : 68162 192 : {r}LeuValValGlyAlaSer{T} >>>> Target Intron 8 >>>> {yr}Va : 199 {|}||||||||||||||||||{|} 746 bp {||}|| +{r}LeuValValGlyAlaSer{T}++ ++{yr}Va 68161 : g{G}TTGGTGGTCGGGGCCAGC{T}gt.........................ag{AC}GT : 67392 200 : lAlaLeuGluCysAlaGlyPheLeuThrGlyIleGlyLeuAspThrThrIleMetMetAr : 219 |||||||||||||||||||||||||||||||:!!|||||||||||||||||||||||||| lAlaLeuGluCysAlaGlyPheLeuThrGlyLeuGlyLeuAspThrThrIleMetMetAr 67391 : GGCCCTGGAGTGTGCCGGCTTCCTCACGGGGCTCGGACTGGACACCACCATCATGATGCG : 67332 220 : gSerIleProLeuArgGlyPheAspGln >>>> Target Intron 9 >>>> Gln : 229 |||||||||||||||||||||||||||| 1957 bp ||| gSerIleProLeuArgGlyPheAspGln++ ++Gln 67331 : CAGCATCCCCCTCCGGGGCTTTGACCAGgt.........................agCAG : 65345 230 : MetSerSerMetValIleGluHisMetAlaSerHisGlyThrArgPheLeuArgGlyCys : 249 |||||||||:!!|||! !||||||||||||:!!||||||||||||||||||||||||||| MetSerSerLeuValThrGluHisMetAlaAlaHisGlyThrArgPheLeuArgGlyCys 65344 : ATGTCATCTTTGGTCACAGAGCACATGGCAGCTCATGGCACCCGGTTCCTGAGGGGCTGC : 65285 250 : AlaProSerArgValArgArgLeuProAspGlyGlnLeuGlnValThrTrpGluAspSer : 269 !|||! !|||||| !!||||||||||||||||||||||||||||||||||||||| ! IleProLeuArgValGlyArgLeuProAspGlyGlnLeuGlnValThrTrpGluAspLeu 65284 : ATCCCCTTGAGAGTGGGGAGGCTCCCGGATGGCCAGCTGCAGGTCACCTGGGAGGACCTC : 65225 270 : ThrThrGlyLysGluAspThrGlyThrPheAspThrValLeuTrpAlaIle{G} >>>> : 287 |||.!!.!!||||||:!!||||||||||||||||||||||||||||||:!!{|} ThrAlaSerLysGluAsnThrGlyThrPheAspThrValLeuTrpAlaVal{G}++ 65224 : ACTGCCAGCAAGGAGAACACAGGCACCTTCGACACTGTGCTGTGGGCCGTA{G}gt.... : 65168 288 : Target Intron 10 >>>> {ly}ArgValProAspThrArgSerLeuAsnLeuGl : 298 9998 bp {||}|||!.!|||!!:||| !!|||||| !||||| ++{ly}ArgAlaProGluThrGlySerLeuAlaLeuGl 65167 : ......................ag{GC}CGGGCTCCAGAGACCGGAAGTCTGGCTCTGGA : 55140 299 : uLysAlaGlyValAspThrSerProAspThrGlnLysIleLeuValAspSerArgGluAl : 318 |||||||||||||..!|||..!||| !!!:!||||||:!!|||||||||:!!!:!||||| uLysAlaGlyValSerThrAspProHisSerGlnLysValLeuValAspAlaGlnGluAl 55139 : GAAGGCGGGAGTGAGTACTGACCCCCACAGCCAGAAGGTCCTGGTGGACGCCCAGGAAGC : 55080 319 : aThrSerValProHisIleTyrAlaIleGlyAspValValGlu >>>> Target Int : 333 |||||||||||||||||||!:!|||||||||||||||!.!||| 2642 aThrSerValProHisIlePheAlaIleGlyAspValAlaGlu++ 55079 : CACCTCCGTCCCTCACATCTTCGCCATCGGAGACGTAGCAGAGgt............... : 55033 334 : ron 11 >>>> GlyArgProGluLeuThrProIleAlaIleMetAlaGlyArgLeuLe : 348 bp |||||||||||||||||||||! |||:!!|||||||||!:!||||| ++GlyArgProGluLeuThrProThrAlaValMetAlaGlyLysLeuLe 55032 : ...........agggGCGGCCCGAGCTGACACCCACGGCTGTAATGGCGGGAAAGCTCTT : 52348 349 : uValGlnArgLeuPheGlyGlySerSerAspLeuMetAspTyrAspAsn >>>> Targ : 365 |!.!|||||||||! ! ! !||||||||||||||||||||||||||| uAlaGlnArgLeuCysHisGlnSerSerAspLeuMetAspTyrAspAsn++ 52347 : AGCCCAGCGGCTCTGCCACCAGTCCTCAGACCTGATGGATTATGACAATgt......... : 52295 366 : et Intron 12 >>>> ValProThrThrValPheThrProLeuGluTyrGlyCysVa : 378 295 bp ||||||||||||||||||||||||||||||||||||||||| ++ValProThrThrValPheThrProLeuGluTyrGlyCysVa 52294 : .................agGTCCCCACGACGGTCTTCACCCCACTGGAGTACGGCTGCGT : 51963 379 : lGlyLeuSerGluGluGluAlaValAlaArgHisGlyGlnGluHisValGlu >>>> T : 396 ||||||||||||||||! !||||||||||||||||||||||||||||||||| lGlyLeuSerGluGluAlaAlaValAlaArgHisGlyGlnGluHisValGlu++ 51962 : GGGGCTGTCAGAGGAGGCGGCTGTGGCTCGCCATGGGCAGGAGCATGTGGAGgt...... : 51907 397 : arget Intron 13 >>>> ValTyrHisAlaHisTyrLysProLeuGluPheThrVa : 408 1503 bp ||||||||||||:!!||||||||||||||||||||||| ++ValTyrHisAlaTyrTyrLysProLeuGluPheThrVa 51906 : ....................agGTTTATCACGCATATTATAAACCCCTGGAGTTCACAGT : 50370 409 : lAlaGlyArgAspAlaSerGlnCysTyrValLys >>>> Target Intron 14 >> : 420 ||||! !|||||||||||||||||||||:!!||| 159 bp lAlaGluArgAspAlaSerGlnCysTyrIleLys++ 50369 : GGCTGAACGGGACGCATCACAGTGCTACATAAAGgt........................ : 50332 421 : >> MetValCysLeuArgGluProProGlnLeuValLeuGlyLeuHisPheLeuGlyPr : 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ++MetValCysLeuArgGluProProGlnLeuValLeuGlyLeuHisPheLeuGlyPr 50331 : ..agATGGTGTGTCTGCGGGAGCCCCCACAGCTGGTGCTGGGCCTGCACTTTCTCGGCCC : 50121 439 : oAsnAlaGlyGluValThrGlnGlyPheAlaLeuGlyIle{Ly} >>>> Target In : 452 ||||||||||||||||||||||||||||||||||||||||{||} 1667 oAsnAlaGlyGluValThrGlnGlyPheAlaLeuGlyIle{Ly}++ 50120 : CAATGCAGGCGAAGTCACTCAAGGATTTGCTCTGGGGATC{AA}gt.............. : 50075 453 : tron 15 >>>> {s}CysGlyAlaSerTyrAlaGlnValMetArgThrValGlyIleH : 467 bp {|}||||||.!!|||||| !||||||||||||||||||||||||| ++{s}CysGlyThrSerTyrGlnGlnValMetArgThrValGlyIleH 50074 : ............ag{G}TGCGGGACCTCCTACCAGCAGGTGATGCGCACAGTGGGCATCC : 48367 468 : isProThrCysSerGluGluValValLysLeuArgIleSerLysArgSerGlyLeuAspP : 487 |||||||||||:!!|||||||||!.!|||||||||||||||||||||||||||||||||| isProThrCysAlaGluGluValAlaLysLeuArgIleSerLysArgSerGlyLeuAspP 48366 : ATCCCACCTGCGCGGAGGAGGTGGCTAAGCTGCGCATCTCCAAGCGCTCAGGCCTGGACC : 48307 488 : roThrValThrGlyCysUnkGly : 494 ||||||||||||||||| ||| roThrValThrGlyCys***Gly 48306 : CCACTGTGACGGGCTGCTGAGGG : 48284 vulgar: SPP00000137_2.0 4 494 . JSZB01015288.1:subseq(490000,135000) 89154 48283 - 2171 M 23 69 S 0 1 5 0 2 I 0 6314 3 0 2 S 1 2 M 18 54 S 0 1 5 0 2 I 0 225 3 0 2 S 1 2 M 47 141 S 0 2 5 0 2 I 0 517 3 0 2 S 1 1 M 24 72 S 0 2 5 0 2 I 0 1665 3 0 2 S 1 1 M 26 78 5 0 2 I 0 507 3 0 2 M 21 63 5 0 2 I 0 3375 3 0 2 M 23 69 S 0 2 5 0 2 I 0 7803 3 0 2 S 1 1 M 6 18 S 0 1 5 0 2 I 0 742 3 0 2 S 1 2 M 30 90 5 0 2 I 0 1953 3 0 2 M 58 174 S 0 1 5 0 2 I 0 9994 3 0 2 S 1 2 M 45 135 5 0 2 I 0 2638 3 0 2 M 32 96 5 0 2 I 0 291 3 0 2 M 31 93 5 0 2 I 0 1499 3 0 2 M 24 72 5 0 2 I 0 155 3 0 2 M 32 96 S 0 2 5 0 2 I 0 1663 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-14 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local gene 48284 89154 2171 - . gene_id 1 ; sequence SPP00000137_2.0 ; gene_orientation + JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local cds 89085 89154 . - . JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local exon 89085 89154 . - . insertions 0 ; deletions 0 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice5 89083 89084 . - . intron_id 1 ; splice_site "GT" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local intron 82767 89084 . - . intron_id 1 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice3 82767 82768 . - . intron_id 0 ; splice_site "AG" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local cds 82710 82766 . - . JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local exon 82710 82766 . - . insertions 0 ; deletions 0 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice5 82708 82709 . - . intron_id 2 ; splice_site "GT" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local intron 82481 82709 . - . intron_id 2 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice3 82481 82482 . - . intron_id 1 ; splice_site "AG" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local cds 82336 82480 . - . JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local exon 82336 82480 . - . insertions 0 ; deletions 0 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice5 82334 82335 . - . intron_id 3 ; splice_site "GT" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local intron 81815 82335 . - . intron_id 3 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice3 81815 81816 . - . intron_id 2 ; splice_site "AG" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local cds 81740 81814 . - . JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local exon 81740 81814 . - . insertions 0 ; deletions 0 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice5 81738 81739 . - . intron_id 4 ; splice_site "GT" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local intron 80071 81739 . - . intron_id 4 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice3 80071 80072 . - . intron_id 3 ; splice_site "AG" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local cds 79992 80070 . - . JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local exon 79992 80070 . - . insertions 0 ; deletions 0 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice5 79990 79991 . - . intron_id 5 ; splice_site "GT" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local intron 79481 79991 . - . intron_id 5 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice3 79481 79482 . - . intron_id 4 ; splice_site "AG" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local cds 79418 79480 . - . JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local exon 79418 79480 . - . insertions 0 ; deletions 0 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice5 79416 79417 . - . intron_id 6 ; splice_site "GT" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local intron 76039 79417 . - . intron_id 6 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice3 76039 76040 . - . intron_id 5 ; splice_site "AG" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local cds 75968 76038 . - . JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local exon 75968 76038 . - . insertions 0 ; deletions 0 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice5 75966 75967 . - . intron_id 7 ; splice_site "GT" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local intron 68161 75967 . - . intron_id 7 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice3 68161 68162 . - . intron_id 6 ; splice_site "AG" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local cds 68141 68160 . - . JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local exon 68141 68160 . - . insertions 0 ; deletions 0 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice5 68139 68140 . - . intron_id 8 ; splice_site "GT" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local intron 67395 68140 . - . intron_id 8 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice3 67395 67396 . - . intron_id 7 ; splice_site "AG" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local cds 67303 67394 . - . JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local exon 67303 67394 . - . insertions 0 ; deletions 0 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice5 67301 67302 . - . intron_id 9 ; splice_site "GT" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local intron 65346 67302 . - . intron_id 9 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice3 65346 65347 . - . intron_id 8 ; splice_site "AG" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local cds 65171 65345 . - . JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local exon 65171 65345 . - . insertions 0 ; deletions 0 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice5 65169 65170 . - . intron_id 10 ; splice_site "GT" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local intron 55173 65170 . - . intron_id 10 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice3 55173 55174 . - . intron_id 9 ; splice_site "AG" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local cds 55036 55172 . - . JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local exon 55036 55172 . - . insertions 0 ; deletions 0 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice5 55034 55035 . - . intron_id 11 ; splice_site "GT" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local intron 52394 55035 . - . intron_id 11 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice3 52394 52395 . - . intron_id 10 ; splice_site "ag" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local cds 52298 52393 . - . JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local exon 52298 52393 . - . insertions 0 ; deletions 0 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice5 52296 52297 . - . intron_id 12 ; splice_site "GT" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local intron 52003 52297 . - . intron_id 12 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice3 52003 52004 . - . intron_id 11 ; splice_site "AG" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local cds 51910 52002 . - . JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local exon 51910 52002 . - . insertions 0 ; deletions 0 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice5 51908 51909 . - . intron_id 13 ; splice_site "GT" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local intron 50407 51909 . - . intron_id 13 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice3 50407 50408 . - . intron_id 12 ; splice_site "AG" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local cds 50335 50406 . - . JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local exon 50335 50406 . - . insertions 0 ; deletions 0 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice5 50333 50334 . - . intron_id 14 ; splice_site "GT" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local intron 50176 50334 . - . intron_id 14 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice3 50176 50177 . - . intron_id 13 ; splice_site "AG" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local cds 50078 50175 . - . JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local exon 50078 50175 . - . insertions 0 ; deletions 0 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice5 50076 50077 . - . intron_id 15 ; splice_site "GT" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local intron 48411 50077 . - . intron_id 15 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local splice3 48411 48412 . - . intron_id 14 ; splice_site "AG" JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local cds 48284 48410 . - . JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local exon 48284 48410 . - . insertions 0 ; deletions 0 JSZB01015288.1:subseq(490000,135000) exonerate:protein2genome:local similarity 48284 89154 2171 - . alignment_id 1 ; Query SPP00000137_2.0 ; Align 89155 5 69 ; Align 82765 29 54 ; Align 82479 48 141 ; Align 81814 96 72 ; Align 80070 121 78 ; Align 79481 147 63 ; Align 76039 168 69 ; Align 68160 192 18 ; Align 67393 199 90 ; Align 65346 229 174 ; Align 55171 288 135 ; Align 52394 333 96 ; Align 52003 365 93 ; Align 50407 396 72 ; Align 50176 420 96 ; Align 48410 453 126 # --- END OF GFF DUMP --- # -- completed exonerate analysis