TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00000137_2.0 # Protein # Thioredoxin reductase 2 (TXNRD2) # Human Length=494 Score E Sequences producing significant alignments: (Bits) Value JSZB01007020.1 Manis javanica isolate MP_PG03-UM SCAFFOLD8069, ... 142 1e-33 JSZB01004433.1 Manis javanica isolate MP_PG03-UM SCAFFOLD5032, ... 113 3e-24 JSZB01015288.1 Manis javanica isolate MP_PG03-UM SCAFFOLD18446,... 109 5e-23 JSZB01000602.1 Manis javanica isolate MP_PG03-UM SCAFFOLD674, w... 102 1e-20 JSZB01010522.1 Manis javanica isolate MP_PG03-UM SCAFFOLD12354,... 58.9 5e-07 JSZB01018391.1 Manis javanica isolate MP_PG03-UM SCAFFOLD22589,... 52.0 7e-05 JSZB01061420.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97828,... 42.4 0.044 JSZB01020934.1 Manis javanica isolate MP_PG03-UM SCAFFOLD26129,... 40.8 0.18 > JSZB01007020.1 Manis javanica isolate MP_PG03-UM SCAFFOLD8069, whole genome shotgun sequence Length=615252 Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/194 (43%), Positives = 119/194 (61%), Gaps = 9/194 (5%) Frame = +2 Query 296 NLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGG 355 NL K G+ T D ILVD + T+V IYA+GDV GR LTP+AI AGR L RLF Sbjct 214469 NLNKLGIQTD-DKGHILVDEFQNTNVKGIYAVGDVC-GRALLTPVAIAAGRKLAHRLFEY 214642 Query 356 SSD-LMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEVYHAHYKPLEFTV-----A 409 D +DYDN+PT VF+ G VGL+E+EA+ ++G+E+V++Y + P+ V Sbjct 214643 KEDSKLDYDNIPTVVFSHPPIGTVGLTEDEAIYKYGKENVKIYSTTFTPMYHAVTKRKTK 214822 Query 410 GRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPT 469 + ++C +KMVC+ + + V+G+H G ++ QGFA+ +K GA+ A TV IHPT Sbjct 214823 XKRKTKCVMKMVCV-DKEEKVVGIHMQGIACDKMLQGFAIAVKTGATKADFDNTVAIHPT 214999 Query 470 CSEEVVKLRISKRS 483 SEE+V LR R+ Sbjct 215000 SSEELVTLR*EPRN 215041 > JSZB01004433.1 Manis javanica isolate MP_PG03-UM SCAFFOLD5032, whole genome shotgun sequence Length=1300580 Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 54/87 (62%), Positives = 65/87 (75%), Gaps = 0/87 (0%) Frame = -2 Query 178 SDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEH 237 SDD+F L PGKTLVVGASYVALECAGFL GIGLD T+M+RSI LRGFDQ M++ + EH Sbjct 406894 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEH 406715 Query 238 MASHGTRFLRGCAPSRVRRLPDGQLQV 264 M HG +F++ P +V LP G L + Sbjct 406714 MEEHGVKFIKEFVPIKVSGLPVGLLII 406634 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 32/50 (64%), Positives = 40/50 (80%), Gaps = 0/50 (0%) Frame = -3 Query 308 TQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSS 357 T KI V E T+VP+IYAIGD++EG+ ELTP+AI AGRLL QRL+ GS+ Sbjct 401418 TGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYAGST 401269 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/39 (74%), Positives = 33/39 (85%), Gaps = 0/39 (0%) Frame = -1 Query 51 GLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQ 89 GLGGTCVNVGCIPKKLMHQAALLG +QD+ YGW + + Sbjct 412742 GLGGTCVNVGCIPKKLMHQAALLGQALQDSRTYGWNIGE 412626 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/93 (44%), Positives = 54/93 (58%), Gaps = 3/93 (3%) Frame = -1 Query 346 RLLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEV-YHAHYKPL 404 R L+ LF + DY+NVPTTVFTPLEYG GLSEE+AV + G+E++EV Y HY L Sbjct 395285 RFLMS*LFSSTKQ-CDYENVPTTVFTPLEYGSCGLSEEKAVEKFGEENIEVSYTFHYGSL 395109 Query 405 EFTVAGRDASQCYVKM-VCLREPPQLVLGLHFL 436 Q Y K+ +E L++ +H L Sbjct 395108 LLVFQNLK*YQSYRKVEK*YKELHMLIMQIHIL 395010 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/43 (63%), Positives = 33/43 (77%), Gaps = 0/43 (0%) Frame = -3 Query 430 VLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSE 472 V+G H LGPNAGEVTQGFA +KCG + Q+ T+GIHP C+E Sbjct 389373 VVGFHVLGPNAGEVTQGFAAAVKCGLTKQQLDSTIGIHPVCAE 389245 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 27/47 (57%), Positives = 33/47 (70%), Gaps = 0/47 (0%) Frame = -1 Query 91 VPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTV 137 V HDW KM EAVQNH+ SLNWG+RV L+++KV Y N FV H + Sbjct 408926 VKHDWEKMTEAVQNHIGSLNWGYRVALREKKVTYENAYGEFVGPHRI 408786 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 12/28 (43%), Positives = 22/28 (79%), Gaps = 0/28 (0%) Frame = -2 Query 395 EVYHAHYKPLEFTVAGRDASQCYVKMVC 422 ++YH+++ PLE+ + RD ++CY K+VC Sbjct 394237 QIYHSYFWPLEWAIPSRDNNKCYAKIVC 394154 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 15/26 (58%), Positives = 21/26 (81%), Gaps = 0/26 (0%) Frame = -2 Query 26 KEAAQLGRKVAVVDYVEPSPQGTRWG 51 +EAA+ +KV V+D+V P+P GTRWG Sbjct 415648 QEAAKYNKKVLVLDFVTPTPLGTRWG 415571 > JSZB01015288.1 Manis javanica isolate MP_PG03-UM SCAFFOLD18446, whole genome shotgun sequence Length=753688 Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 49/61 (80%), Positives = 54/61 (89%), Gaps = 0/61 (0%) Frame = -2 Query 228 QQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAIG 287 QQMSS+V EHMA+HGTRFLRGC P RV RLPDGQLQVTWED T KE+TGTFDTVLWA+G Sbjct 555348 QQMSSLVTEHMAAHGTRFLRGCIPLRVGRLPDGQLQVTWEDLTASKENTGTFDTVLWAVG 555169 Query 288 R 288 + Sbjct 555168 K 555166 Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 42/53 (79%), Positives = 46/53 (87%), Gaps = 0/53 (0%) Frame = -2 Query 43 PSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHDW 95 P GT WGLGGTCVNVGCIPKKLMHQAALLG +I+DAP+YGWE+AQP PH W Sbjct 572493 PHAPGTTWGLGGTCVNVGCIPKKLMHQAALLGTMIRDAPHYGWELAQPTPHSW 572335 Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 54/111 (49%), Positives = 57/111 (51%), Gaps = 53/111 (48%) Frame = -1 Query 395 EVYHAHYKPLEFTVAGRDASQCYVK----------------------------------- 419 +VYHA+YKPLEFTVA RDASQCY+K Sbjct 540409 QVYHAYYKPLEFTVAERDASQCYIKVSLLLDQDRGVPGGEREGRSWPPGMVSPTWPWMPL 540230 Query 420 ------------------MVCLREPPQLVLGLHFLGPNAGEVTQGFALGIK 452 MVCLREPPQLVLGLHFLGPNAGEVTQGFALGIK Sbjct 540229 GSPGARLRPGRQLTVWFQMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIK 540077 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 37/43 (86%), Positives = 39/43 (91%), Gaps = 0/43 (0%) Frame = -3 Query 452 KCGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCXG 494 +CG SY QVMRTVGIHPTC+EEV KLRISKRSGLDPTVTGC G Sbjct 538412 RCGTSYQQVMRTVGIHPTCAEEVAKLRISKRSGLDPTVTGC*G 538284 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 0/53 (0%) Frame = -1 Query 283 LWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSREATSVPHIYAIGDVVEGRP 335 L+ GR P+T SL LEKAGV T P +QK+LVD++EATSVPHI+AIGDV E P Sbjct 545185 LFPSGRAPETGSLALEKAGVSTDPHSQKVLVDAQEATSVPHIFAIGDVAEVWP 545027 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/43 (79%), Positives = 34/43 (79%), Gaps = 0/43 (0%) Frame = -1 Query 354 GGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEV 396 GG D VPTTVFTPLEYGCVGLSEE AVARHGQEHVEV Sbjct 542035 GGLPDSEPAFQVPTTVFTPLEYGCVGLSEEAAVARHGQEHVEV 541907 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/30 (97%), Positives = 30/30 (100%), Gaps = 0/30 (0%) Frame = -1 Query 199 VALECAGFLTGIGLDTTIMMRSIPLRGFDQ 228 VALECAGFLTG+GLDTTIMMRSIPLRGFDQ Sbjct 557392 VALECAGFLTGLGLDTTIMMRSIPLRGFDQ 557303 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/45 (62%), Positives = 32/45 (71%), Gaps = 0/45 (0%) Frame = -3 Query 321 VPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNV 365 VP + +GRPELTP A+MAG+LL QRL SSDLMDYDNV Sbjct 542429 VPK*PGVPSSCQGRPELTPTAVMAGKLLAQRLCHQSSDLMDYDNV 542295 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/25 (100%), Positives = 25/25 (100%), Gaps = 0/25 (0%) Frame = -1 Query 96 RKMAEAVQNHVKSLNWGHRVQLQDR 120 RKMAEAVQNHVKSLNWGHRVQLQDR Sbjct 571813 RKMAEAVQNHVKSLNWGHRVQLQDR 571739 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/24 (96%), Positives = 24/24 (100%), Gaps = 0/24 (0%) Frame = -1 Query 168 IEGALEYGITSDDIFWLKESPGKT 191 +EGALEYGITSDDIFWLKESPGKT Sbjct 566038 VEGALEYGITSDDIFWLKESPGKT 565967 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/28 (79%), Positives = 25/28 (89%), Gaps = 0/28 (0%) Frame = -2 Query 120 RKVKYFNIKASFVDEHTVCGVAKGGKEI 147 RKVKYFNIKASFV++HTV GV K GKE+ Sbjct 570072 RKVKYFNIKASFVNKHTVRGVTKDGKEV 569989 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 17/24 (71%), Positives = 21/24 (88%), Gaps = 0/24 (0%) Frame = -3 Query 146 EILLSADHIIIATGGRPRYPTHIE 169 + LLSA+HI+IATGGRPRYP H+ Sbjct 569483 QTLLSAEHIVIATGGRPRYPMHVS 569412 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/34 (59%), Positives = 25/34 (74%), Gaps = 0/34 (0%) Frame = -1 Query 28 AAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGC 61 AAQLG+KVAVVDYVEPSP+G + + + GC Sbjct 572767 AAQLGKKVAVVDYVEPSPRGRQPPMEPCVLGRGC 572666 > JSZB01000602.1 Manis javanica isolate MP_PG03-UM SCAFFOLD674, whole genome shotgun sequence Length=164803 Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 49/77 (64%), Positives = 58/77 (75%), Gaps = 0/77 (0%) Frame = +1 Query 178 SDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMRSIPLRGFDQQMSSMVIEH 237 SDD+F L PGKTLVVGASYVALECAGFL G+GLD TIM+RSI LRGFDQ+M+ V + Sbjct 143617 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTIMVRSILLRGFDQEMAEKVGSY 143796 Query 238 MASHGTRFLRGCAPSRV 254 M +G +F+R P V Sbjct 143797 MEQYGVKFIRKFVPVMV 143847 Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/51 (59%), Positives = 41/51 (80%), Gaps = 0/51 (0%) Frame = +2 Query 305 SPDTQKILVDSREATSVPHIYAIGDVVEGRPELTPIAIMAGRLLVQRLFGG 355 S + KI V+ E T+VP++YAIGD++EG+ ELTP+AI AG+LL +RLFGG Sbjct 150641 SNRSGKIPVNDMEQTNVPYVYAIGDILEGKIELTPVAIQAGKLLARRLFGG 150793 Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 29/39 (74%), Positives = 32/39 (82%), Gaps = 0/39 (0%) Frame = +2 Query 51 GLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQ 89 GLGGTCVNVGCIPKKLMHQAALLG + D+ +GWE Q Sbjct 136283 GLGGTCVNVGCIPKKLMHQAALLGQALTDSRKFGWEYNQ 136399 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/36 (67%), Positives = 31/36 (86%), Gaps = 0/36 (0%) Frame = +3 Query 361 DYDNVPTTVFTPLEYGCVGLSEEEAVARHGQEHVEV 396 DY +VPTTVFTPLEYGC GLSEE+A+ + +E++EV Sbjct 154113 DYTSVPTTVFTPLEYGCCGLSEEKAIEMYQKENLEV 154220 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 21/48 (44%), Positives = 31/48 (65%), Gaps = 0/48 (0%) Frame = +3 Query 90 PVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTV 137 V H+W M EA+QNH+ SLNW +R+ L+++ V Y N FV+ H + Sbjct 141084 SVKHNWETMTEAIQNHIGSLNWSYRLSLREKSVAYINSYGEFVEHHKL 141227 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 18/25 (72%), Positives = 21/25 (84%), Gaps = 0/25 (0%) Frame = +2 Query 27 EAAQLGRKVAVVDYVEPSPQGTRWG 51 EAA LG+KV V+D+V PSPQGT WG Sbjct 134555 EAAILGKKVMVLDFVVPSPQGTSWG 134629 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 15/28 (54%), Positives = 22/28 (79%), Gaps = 0/28 (0%) Frame = +2 Query 395 EVYHAHYKPLEFTVAGRDASQCYVKMVC 422 +V+H + PLE+TVAGRD + CY K++C Sbjct 162341 QVFHTLFWPLEWTVAGRDNNTCYTKIIC 162424 > JSZB01010522.1 Manis javanica isolate MP_PG03-UM SCAFFOLD12354, whole genome shotgun sequence Length=168235 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 0/43 (0%) Frame = +2 Query 430 VLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSE 472 V+G H LGP+AGEVTQGFA +KCG + + T+GIHPTC E Sbjct 6728 VIGFHILGPSAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE 6856 > JSZB01018391.1 Manis javanica isolate MP_PG03-UM SCAFFOLD22589, whole genome shotgun sequence Length=19364 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 0/49 (0%) Frame = +2 Query 430 VLGLHFLGPNAGEVTQGFALGIKCGASYAQVMRTVGIHPTCSEEVVKLR 478 V+G+H G E+ QGFA+ +K GA+ A TV IHPT SEE+V LR Sbjct 11951 VVGIHMQGIGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVTLR 12097 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/44 (52%), Positives = 28/44 (64%), Gaps = 1/44 (2%) Frame = +1 Query 340 IAIMAGRLLVQRLFGGSSD-LMDYDNVPTTVFTPLEYGCVGLSE 382 +AI AGR L RLF D +DYDN+PT VF+ G VGL+E Sbjct 8632 VAIAAGRKLAHRLFEYKEDSKLDYDNIPTVVFSHPPIGTVGLTE 8763 > JSZB01061420.1 Manis javanica isolate MP_PG03-UM SCAFFOLD97828, whole genome shotgun sequence Length=2593 Score = 42.4 bits (98), Expect = 0.044, Method: Compositional matrix adjust. Identities = 19/33 (58%), Positives = 24/33 (73%), Gaps = 0/33 (0%) Frame = -3 Query 49 RWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAP 81 R LGGTCVNVGC+P K+M +AA + L Q +P Sbjct 215 RGTLGGTCVNVGCVPSKIMIRAAHIARLRQASP 117 > JSZB01020934.1 Manis javanica isolate MP_PG03-UM SCAFFOLD26129, whole genome shotgun sequence Length=45746 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 37/61 (61%), Gaps = 2/61 (3%) Frame = -1 Query 324 IYAIGDVVEGRPELTPIAIMAGRLLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEE 383 IYAIGDVV G P L A G + V+ + GG+ + DY+ VP+ ++T E VG SEE Sbjct 37211 IYAIGDVVAG-PMLAHKAEDEGIICVEGMAGGAVHI-DYNCVPSVIYTHPEVAWVGKSEE 37038 Query 384 E 384 + Sbjct 37037 Q 37035 Lambda K H a alpha 0.319 0.137 0.421 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 300926769952 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40