Command line: [exonerate -m p2g --showtargetgff -q TXNRD1.fa -t TXNRD1.subseq] Hostname: [ws101069u] C4 Alignment: ------------ Query: SPP00000129_2.0 # Protein # Thioredoxin reductase 1 (TXNRD1) # Human Target: JSZB01004433.1:subseq(330000,180000) Manis javanica isolate MP_PG03-UM SCAFFOLD5032, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 2749 Query range: 41 -> 649 Target range: 137345 -> 49579 42 : GluAsnProAlaGlyPheThrSerThrAlaThrAlaAspSerArgAlaLeuLeuGlnA : 61 .....!|||..!||| !!:!|||||||||||||||||| !!! ! !! !||| !| SerGlyProCysGlyProSerSerThrAlaThrAlaAspProMetIleArgLeuTrpA 137345 : AGTGGCCCCTGCGGCCCCAGCAGCACGGCCACTGCAGACCCCATGATCCGGCTGTGGG : 137288 62 : laTyrIleAspGlyHisSerValValIlePheSerArgSerThrCysThrArgCysTh : 80 |||||||||||.!!||| !!||||||! !||||||!.!|||! !|||! !||||||.! laTyrIleAspSerHisProValValSerPheSerHisSerMetCysLysArgCysAl 137287 : CCTACATAGACAGCCACCCTGTGGTTAGCTTCAGTCATTCCATGTGCAAACGCTGTGC : 137231 81 : rGlu >>>> Target Intron 1 >>>> ValLysLysLeuPheLysSerLeuC : 90 !||| 4366 bp |||||||||||||||||||||:!!| aGlu++ ++ValLysLysLeuPheLysSerMetC 137230 : TGAGgt.........................agGTAAAGAAGTTATTTAAATCTATGT : 132835 91 : ysValProTyrPheValLeuGluLeuAspGlnThr{G} >>>> Target Intron : 102 ||||||||||||||:!!|||||||||||||||.!!{|} 26558 bp ysValProTyrPheLeuLeuGluLeuAspGlnAla{G}++ 132834 : GTGTTCCTTATTTTTTGCTGGAACTTGATCAAGCA{G}gt.................. : 132796 103 : 2 >>>> {lu}AspGlyArgAlaLeuGluGlyThrLeuSerGluLeuAlaAlaGlu : 117 {||}|||||| !!||||||||||||.!!! !|||||||||.!!:!!||| ++{lu}AspGlyGlyAlaLeuGluGlyAlaArgSerGluLeuThrSerGlu 132795 : .......ag{AG}GACGGGGGGGCCCTCGAGGGAGCGCGGTCCGAACTGACCTCGGAA : 106196 118 : ThrAspLeuProValValPheValLysGlnArgLysIleGlyGlyHisGlyProThrL : 137 ||||||:!!|||||||||!!.||||||!:!|||!!.||||||||||||||| !!|||| ThrAspValProValValLeuValLysArgArgAsnIleGlyGlyHisGlySerThrL 106195 : ACCGACGTCCCCGTTGTGTTGGTGAAGCGGAGGAACATAGGCGGCCATGGCTCGACCC : 106136 138 : euLys >>>> Target Intron 3 >>>> AlaTyrGlnGluGlyArgLeuGln : 146 ||||| 18942 bp ||||||:!!||||||||||||||| euLys++ ++AlaTyrGluGluGlyArgLeuGln 106135 : TGAAGgt.........................aggcttATGAGGAGGGCCGACTTCAA : 87167 147 : LysLeuLeuLysMetAsnGlyProGluAspLeuProLysSerTyrAspTyrAspLeuI : 166 !:!|||||||||||||||||| !!||||||||| !!:!!||||||||||||||||||| ArgLeuLeuLysMetAsnGlySerGluAspLeuSerGluSerTyrAspTyrAspLeuI 87166 : AGACTATTGAAGATGAATGGCTCTGAGGATCTATCTGAGTCCTATGACTATGATCTCA : 87107 167 : leIleIleGlyGlyGlySerGlyGlyLeuAlaAlaAlaLys >>>> Target Int : 180 ||||||||||||||||||||||||||||||||||||||||| 1420 b leIleIleGlyGlyGlySerGlyGlyLeuAlaAlaAlaLys+- 87106 : TCATCATTGGAGGGGGCTCCGGAGGACTGGCAGCTGCCAAGgc............... : 87063 181 : ron 4 >>>> GluAlaAlaGlnTyrGlyLysLysValMetValLeuAspPheValT : 195 p |||||||||:!!|||..!|||||||||:!!|||||||||||||||| ++GluAlaAlaLysTyrAsnLysLysValLeuValLeuAspPheValT 87062 : ..........agGAGGCAGCCAAATATAACAAGAAAGTGTTGGTCCTGGATTTTGTCA : 85600 196 : hrProThrProLeuGlyThrArgTrp{G} >>>> Target Intron 5 >>>> : 204 ||||||||||||||||||||||||||{|} 2831 bp hrProThrProLeuGlyThrArgTrp{G}++ ++ 85599 : CTCCAACCCCTCTTGGAACTAGATGG{G}gt.........................ag : 82743 205 : {ly}LeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGln : 222 {||}|||||||||||||||||||||||||||||||||||||||||||||||||||||| {ly}LeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGln 82742 : {GC}CTTGGAGGAACATGCGTGAATGTGGGCTGCATACCTAAAAAACTGATGCATCAA : 82688 223 : AlaAlaLeuLeuGlyGlnAlaLeuGlnAspSerArgAsnTyrGlyTrpLysValGluG : 242 ||||||||||||||||||||||||||||||||||||!.!|||||||||!!.:!!! !| AlaAlaLeuLeuGlyGlnAlaLeuGlnAspSerArgThrTyrGlyTrpAsnIleGlyG 82687 : GCAGCTTTGTTAGGACAAGCCCTGCAAGACTCTCGAACCTATGGATGGAACATTGGGG : 82628 243 : luThr{V} >>>> Target Intron 6 >>>> {al}LysHisAspTrpAspAr : 250 |||||{|} 3696 bp {||}||||||||||||!!:!: luThr{V}++ ++{al}LysHisAspTrpGluLy 82627 : AGACG{G}gt.........................ag{TT}AAACATGACTGGGAAAA : 78908 251 : gMetIleGluAlaValGlnAsnHisIleGlySerLeuAsnTrpGlyTyrArgValAla : 269 !|||! !||||||||||||||||||||||||||||||||||||||||||||||||||| sMetThrGluAlaValGlnAsnHisIleGlySerLeuAsnTrpGlyTyrArgValAla 78907 : AATGACCGAAGCTGTGCAGAACCACATTGGCTCTCTGAACTGGGGCTACCGGGTAGCA : 78851 270 : LeuArgGluLysLysValValTyrGluAsnAlaTyrGlyGlnPheIleGlyProHisA : 289 ||||||||||||||||||...||||||||||||||||||:!!|||:!!|||||||||| LeuArgGluLysLysValThrTyrGluAsnAlaTyrGlyGluPheValGlyProHisA 78850 : CTTCgggagaaaaaagtcacctatgaGAATGCGTACGGGGAGTTTGTCGGTCCCCATA : 78791 290 : rgIleLys >>>> Target Intron 7 >>>> AlaThrAsnAsnLysGlyLys : 298 |||||||| 382 bp .!!|||||||||||||||||| rgIleLys++ ++ThrThrAsnAsnLysGlyLys 78790 : GGATTAAGgt.........................agACAACAAAtaacaaaggcaaa : 78382 299 : GluLysIleTyrSerAlaGluArgPheLeuIleAlaThrGlyGluArgProArgTyrL : 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GluLysIleTyrSerAlaGluArgPheLeuIleAlaThrGlyGluArgProArgTyrL 78381 : gaaaaaatctATTCAGCAGAGAGATTTCTGATTGCTACTGGTGAAAGGCCACGTTACT : 78322 319 : euGlyIleProGlyAspLysGluTyrCysIleSer{Se} >>>> Target Intro : 330 |||||||||||||||||!:!|||||||||||||||{||} 1392 bp euGlyIleProGlyAspArgGluTyrCysIleSer{Se}++ 78321 : TGGGCATTCCTGGTGACAGAGAATACTGCATCAGC{AG}gt................. : 78282 331 : n 8 >>>> {r}AspAspLeuPheSerLeuProTyrCysProGlyLysThrLeuVal : 345 {|}||||||||||||||||||||||||||||||||||||||||||||| ++{r}AspAspLeuPheSerLeuProTyrCysProGlyLysThrLeuVal 78281 : ........ag{t}gaTGATCTTTTTTCCCTACCTTACTGCCCGGGTAAGACCCTGGTG : 76849 346 : ValGlyAlaSerTyrValAlaLeuGluCysAlaGlyPheLeuAlaGlyIleGlyLeuA : 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ValGlyAlaSerTyrValAlaLeuGluCysAlaGlyPheLeuAlaGlyIleGlyLeuA 76848 : GTTGGAGCATCGTATGTTGCTTTGGAATGTGCTGGATTTCTTGCTGGCATTGGTTTAG : 76789 366 : spValThrValMetValArgSerIleLeuLeuArgGlyPheAspGlnAspMetAlaAs : 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| spValThrValMetValArgSerIleLeuLeuArgGlyPheAspGlnAspMetAlaAs 76788 : ATGTCACTGTTATGGTGCGGTCCATTCTCCTTAGAGGATTTGACCAGGACATGGCCAA : 76732 385 : nLysIleGlyGluHisMetGluGluHisGlyIleLysPheIleArgGlnPheValPro : 403 |||||||||||||||||||||||||||||||:!!|||||||||!:!:!!||||||||| nLysIleGlyGluHisMetGluGluHisGlyValLysPheIleLysGluPheValPro 76731 : CAAAATTGGAGAACATATGGAAGAGCATGGGGTCAAGTTTATAAAGGAATTTGTACCA : 76675 404 : IleLys >>>> Target Intron 9 >>>> ValGluGlnIleGluAlaGlyTh : 413 |||||| 2366 bp ||||||||||||||||||||||| IleLys++ ++ValGluGlnIleGluAlaGlyTh 76674 : ATAAAAgt.........................agGTTGAACAAATTGAAGCAGGGAC : 74279 414 : rProGlyArgLeuArgValValAlaGlnSerThrAsnSerGluGluIleIleGluGly : 432 ||||||||||||||||||||||||||||||||||!:!|||! |||! !||||||||| rProGlyArgLeuArgValValAlaGlnSerThrSerSerGlyGluThrIleGluGly 74278 : ACCCGGCCGACTGAGGGTGGTAGCGCAGTCCACCAGCAGTGGCGAAACCATCGAAGGA : 74222 433 : GluTyrAsnThr >>>> Target Intron 10 >>>> ValMetLeuAlaIleG : 442 |||||||||||| 590 bp |||:!!|||||||||| GluTyrAsnThr++ ++ValLeuLeuAlaIleG 74221 : GAGTATAATACGgt..........................agGTGTTGCTGGCAATAG : 73602 443 : lyArgAspAlaCysThrArgLysIleGlyLeuGluThrValGlyValLysIleAsnGl : 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| lyArgAspAlaCysThrArgLysIleGlyLeuGluThrValGlyValLysIleAsnGl 73601 : GAAGAGATGCTTGCACAAGAAAAATTGGTTTGGAAACTGTGGgggtaaagataaatga : 73545 462 : u{Ly} >>>> Target Intron 11 >>>> {s}ThrGlyLysIleProValTh : 469 |{||} 2121 bp {|}|||||||||||||||||||| u{Ly}++ ++{s}ThrGlyLysIleProValTh 73544 : a{aa}gt..........................ag{G}ACTGGAAAAATACCTGTCAC : 71400 470 : rAspGluGluGlnThrAsnValProTyrIleTyrAlaIleGlyAspIleLeuGluAsp : 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||! rAspGluGluGlnThrAsnValProTyrIleTyrAlaIleGlyAspIleLeuGluGly 71399 : AGATGAAGAGCAGACCAATGTGCCATATATCTACGCCATTGGTGATATATTGGAGGGG : 71343 489 : LysValGluLeuThrProValAlaIleGlnAlaGlyArgLeuLeuAlaGlnArgLeuT : 508 |||:!!|||||||||||||||||||||||||||||||||||||||||||||||||||| LysLeuGluLeuThrProValAlaIleGlnAlaGlyArgLeuLeuAlaGlnArgLeuT 71342 : AAGCTGGAGCTCACCCCAGTAGCAATCCAGGCAGGAAGATTGCTGGCTCAGAGGCTGT : 71283 509 : yrAlaGlySerThrValLys >>>> Target Intron 12 >>>> CysAspTy : 517 |||||||||||||||||||| 6016 bp |||||||| yrAlaGlySerThrValLys++ ++CysAspTy 71282 : ATGCCGGCTCCACTGTCAAGgt..........................agTGTGACTA : 65240 518 : rGluAsnValProThrThrValPheThrProLeuGluTyrGlyAlaCysGlyLeuSer : 536 |||||||||||||||||||||||||||||||||||||||||||:!!|||||||||||| rGluAsnValProThrThrValPheThrProLeuGluTyrGlySerCysGlyLeuSer 65239 : TGAAAATGTTCCAACAACTGTGTTTACTCCTTTGGAATACGGTTCTTGTGGTCTTTCT : 65183 537 : GluGluLysAlaValGluLysPheGlyGluGluAsnIleGlu >>>> Target In : 551 |||||||||||||||||||||||||||||||||||||||||| 904 GluGluLysAlaValGluLysPheGlyGluGluAsnIleGlu++ 65182 : GAAGAGAAAGCTGTGGAGAAATTCGGGGAAGAAAATATTGAAgt.............. : 65136 552 : tron 13 >>>> ValTyrHisSerTyrPheTrpProLeuGluTrpThrIleProSe : 565 bp :!!||||||||||||||||||||||||||||||.!!|||||||| ++IleTyrHisSerTyrPheTrpProLeuGluTrpAlaIleProSe 65135 : ............agATTTACCATAGTTACTTCTGGCCGCTGGAATGGGCAATTCCATC : 64192 566 : rArgAspAsnAsnLysCysTyrAlaLysIleIleCysAsnThrLysAspAsn >>>> : 583 |||||||||||||||||||||||||||||||:!!||||||! !||||||||| rArgAspAsnAsnLysCysTyrAlaLysIleValCysAsnIleLysAspAsn++ 64191 : AAGAGATAACAACAAATGTTATGCAAAAATAGTCTGTAATATCAAAGACAATgt.... : 64136 584 : Target Intron 14 >>>> GluArgValValGlyPheHisValLeuGlyProA : 594 4759 bp |||||||||||||||||||||||||||||||||| ++GluArgValValGlyPheHisValLeuGlyProA 64135 : ......................agGAACGAGTGGTGGGCTTCCACGTGCTGGGTCCAA : 59346 595 : snAlaGlyGluValThrGlnGlyPheAlaAlaAlaLeuLysCysGlyLeuThrLysLy : 613 |||||||||||||||||||||||||||||||||||:!!||||||||||||||||||:! snAlaGlyGluValThrGlnGlyPheAlaAlaAlaValLysCysGlyLeuThrLysGl 59345 : ATGCTGGGGAAGTTACACAGGGCTTTGCGGCCGCAGTCAAGTGTGGGCTGACCAAGCA : 59289 614 : sGlnLeuAspSerThrIleGlyIleHisProValCysAlaGlu >>>> Target I : 628 !|||||||||||||||||||||||||||||||||||||||||| 959 nGlnLeuAspSerThrIleGlyIleHisProValCysAlaGlu++ 59288 : GCAGCTGGACAGCACCATCGGGATCCACCCTGTCTGCGCAGAGgt............. : 59242 629 : ntron 15 >>>> ValPheThrThrLeuSerValThrLysArgSerGlyAlaSerI : 642 9 bp ||||||||||||||||||||||||||||||||||||!.!..!| ++ValPheThrThrLeuSerValThrLysArgSerGlyGlyAspI 59241 : .............agGTGTTCACAACTCTGTCGGTGACCAAGCGCTCCGGGGGAGACA : 49603 643 : leLeuGlnAlaGlyCysUnkGly : 649 ||||||||||||||||| ||| leLeuGlnAlaGlyCys***Gly 49602 : TCCTCCAGGCTGGCTGCTGAGGT : 49580 vulgar: SPP00000129_2.0 41 649 . JSZB01004433.1:subseq(330000,180000) 137345 49579 - 2749 M 40 120 5 0 2 I 0 4362 3 0 2 M 20 60 S 0 1 5 0 2 I 0 26554 3 0 2 S 1 2 M 36 108 5 0 2 I 0 18938 3 0 2 M 41 123 5 0 2 I 0 1416 3 0 2 M 24 72 S 0 1 5 0 2 I 0 2827 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 3692 3 0 2 S 1 2 M 47 141 5 0 2 I 0 378 3 0 2 M 38 114 S 0 2 5 0 2 I 0 1388 3 0 2 S 1 1 M 75 225 5 0 2 I 0 2362 3 0 2 M 31 93 5 0 2 I 0 586 3 0 2 M 25 75 S 0 2 5 0 2 I 0 2117 3 0 2 S 1 1 M 52 156 5 0 2 I 0 6012 3 0 2 M 36 108 5 0 2 I 0 900 3 0 2 M 32 96 5 0 2 I 0 4755 3 0 2 M 45 135 5 0 2 I 0 9595 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-14 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local gene 49580 137345 2749 - . gene_id 1 ; sequence SPP00000129_2.0 ; gene_orientation + JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local cds 137226 137345 . - . JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local exon 137226 137345 . - . insertions 0 ; deletions 0 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice5 137224 137225 . - . intron_id 1 ; splice_site "GT" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local intron 132860 137225 . - . intron_id 1 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice3 132860 132861 . - . intron_id 0 ; splice_site "AG" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local cds 132799 132859 . - . JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local exon 132799 132859 . - . insertions 0 ; deletions 0 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice5 132797 132798 . - . intron_id 2 ; splice_site "GT" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local intron 106241 132798 . - . intron_id 2 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice3 106241 106242 . - . intron_id 1 ; splice_site "AG" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local cds 106131 106240 . - . JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local exon 106131 106240 . - . insertions 0 ; deletions 0 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice5 106129 106130 . - . intron_id 3 ; splice_site "GT" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local intron 87189 106130 . - . intron_id 3 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice3 87189 87190 . - . intron_id 2 ; splice_site "ag" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local cds 87066 87188 . - . JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local exon 87066 87188 . - . insertions 0 ; deletions 0 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice5 87064 87065 . - . intron_id 4 ; splice_site "GC" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local intron 85646 87065 . - . intron_id 4 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice3 85646 85647 . - . intron_id 3 ; splice_site "ag" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local cds 85573 85645 . - . JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local exon 85573 85645 . - . insertions 0 ; deletions 0 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice5 85571 85572 . - . intron_id 5 ; splice_site "Gt" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local intron 82742 85572 . - . intron_id 5 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice3 82742 82743 . - . intron_id 4 ; splice_site "AG" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local cds 82622 82741 . - . JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local exon 82622 82741 . - . insertions 0 ; deletions 0 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice5 82620 82621 . - . intron_id 6 ; splice_site "GT" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local intron 78926 82621 . - . intron_id 6 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice3 78926 78927 . - . intron_id 5 ; splice_site "AG" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local cds 78783 78925 . - . JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local exon 78783 78925 . - . insertions 0 ; deletions 0 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice5 78781 78782 . - . intron_id 7 ; splice_site "GT" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local intron 78401 78782 . - . intron_id 7 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice3 78401 78402 . - . intron_id 6 ; splice_site "AG" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local cds 78285 78400 . - . JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local exon 78285 78400 . - . insertions 0 ; deletions 0 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice5 78283 78284 . - . intron_id 8 ; splice_site "GT" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local intron 76893 78284 . - . intron_id 8 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice3 76893 76894 . - . intron_id 7 ; splice_site "ag" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local cds 76667 76892 . - . JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local exon 76667 76892 . - . insertions 0 ; deletions 0 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice5 76665 76666 . - . intron_id 9 ; splice_site "GT" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local intron 74301 76666 . - . intron_id 9 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice3 74301 74302 . - . intron_id 8 ; splice_site "AG" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local cds 74208 74300 . - . JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local exon 74208 74300 . - . insertions 0 ; deletions 0 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice5 74206 74207 . - . intron_id 10 ; splice_site "GT" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local intron 73618 74207 . - . intron_id 10 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice3 73618 73619 . - . intron_id 9 ; splice_site "AG" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local cds 73541 73617 . - . JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local exon 73541 73617 . - . insertions 0 ; deletions 0 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice5 73539 73540 . - . intron_id 11 ; splice_site "gt" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local intron 71420 73540 . - . intron_id 11 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice3 71420 71421 . - . intron_id 10 ; splice_site "AG" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local cds 71263 71419 . - . JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local exon 71263 71419 . - . insertions 0 ; deletions 0 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice5 71261 71262 . - . intron_id 12 ; splice_site "GT" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local intron 65247 71262 . - . intron_id 12 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice3 65247 65248 . - . intron_id 11 ; splice_site "AG" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local cds 65139 65246 . - . JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local exon 65139 65246 . - . insertions 0 ; deletions 0 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice5 65137 65138 . - . intron_id 13 ; splice_site "GT" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local intron 64235 65138 . - . intron_id 13 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice3 64235 64236 . - . intron_id 12 ; splice_site "AG" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local cds 64139 64234 . - . JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local exon 64139 64234 . - . insertions 0 ; deletions 0 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice5 64137 64138 . - . intron_id 14 ; splice_site "GT" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local intron 59380 64138 . - . intron_id 14 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice3 59380 59381 . - . intron_id 13 ; splice_site "AG" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local cds 59245 59379 . - . JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local exon 59245 59379 . - . insertions 0 ; deletions 0 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice5 59243 59244 . - . intron_id 15 ; splice_site "GT" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local intron 49646 59244 . - . intron_id 15 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local splice3 49646 49647 . - . intron_id 14 ; splice_site "AG" JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local cds 49580 49645 . - . JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local exon 49580 49645 . - . insertions 0 ; deletions 0 JSZB01004433.1:subseq(330000,180000) exonerate:protein2genome:local similarity 49580 137345 2749 - . alignment_id 1 ; Query SPP00000129_2.0 ; Align 137346 42 120 ; Align 132860 82 60 ; Align 106239 103 108 ; Align 87189 139 123 ; Align 85646 180 72 ; Align 82740 205 117 ; Align 78924 245 141 ; Align 78401 292 114 ; Align 76892 331 225 ; Align 74301 406 93 ; Align 73618 437 75 ; Align 71419 463 156 ; Align 65247 515 108 ; Align 64235 551 96 ; Align 59380 583 135 ; Align 49646 628 66 # --- END OF GFF DUMP --- # -- completed exonerate analysis