TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000067_2.0 # Protein # 15 kDa selenoprotein (Sel15) # Human

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01012017.1 Manis javanica isolate MP_PG03-UM SCAFFOLD14246,...  88.2    5e-18
  JSZB01034099.1 Manis javanica isolate MP_PG03-UM SCAFFOLD45619,...  43.9    2e-04
  JSZB01003378.1 Manis javanica isolate MP_PG03-UM SCAFFOLD3795, ...  33.5    4.5  


> JSZB01012017.1 Manis javanica isolate MP_PG03-UM SCAFFOLD14246, 
whole genome shotgun sequence
Length=130207

 Score = 88.2 bits (217),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 42/45 (93%), Positives = 45/45 (100%), Gaps = 0/45 (0%)
 Frame = -3

Query  118    IKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI  162
              ++YVRGSDPVLKLLDD+GNIAEELSILKWNTDSVEEFLSEKLERI
Sbjct  41597  LQYVRGSDPVLKLLDDSGNIAEELSILKWNTDSVEEFLSEKLERI  41463


 Score = 88.2 bits (217),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 56/62 (90%), Positives = 58/62 (94%), Gaps = 0/62 (0%)
 Frame = -3

Query  26     VSAFGAEFSSEACRELGFssnllcsscdllGQFNLLQLDPDCRGCCQEEAQFETKKLYAG  85
              VSA GAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKK+   
Sbjct  77783  VSALGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKKVLFS  77604

Query  86     AI  87
              +I
Sbjct  77603  SI  77598


 Score = 43.1 bits (100),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 23/34 (68%), Positives = 25/34 (74%), Gaps = 1/34 (3%)
 Frame = -2

Query  77     FETKKLYAGAILEVCGXKLGRFPQVQAF-VRSDK  109
              F   +LYAGAILEVCG KLGRFPQVQ   + S K
Sbjct  55695  FFHLQLYAGAILEVCG*KLGRFPQVQGIKINSSK  55594


 Score = 37.4 bits (85),  Expect = 0.20, Method: Compositional matrix adjust.
 Identities = 17/17 (100%), Positives = 17/17 (100%), Gaps = 0/17 (0%)
 Frame = -2

Query  103    AFVRSDKPKLFRGLQIK  119
              AFVRSDKPKLFRGLQIK
Sbjct  44397  AFVRSDKPKLFRGLQIK  44347


> JSZB01034099.1 Manis javanica isolate MP_PG03-UM SCAFFOLD45619, 
whole genome shotgun sequence
Length=316706

 Score = 43.9 bits (102),  Expect(3) = 2e-04, Method: Compositional matrix adjust.
 Identities = 32/95 (34%), Positives = 42/95 (44%), Gaps = 19/95 (20%)
 Frame = -2

Query  56     GQFNLLQLDPDCRGCCQEEAQFETKKLYAGAILEVCGXKLGRFPQVQAFVR--SDKPKLF  113
              GQF L Q DPDCR  CQ E   +     +G +      K G+FP +    R   +   +F
Sbjct  56656  GQFILFQPDPDCREYCQREVPLQDVGCRSGNLF----TKPGKFPSIHDSSRGLQNMSNMF  56489

Query  114    RGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNT  148
                L  K +             GN+AEEL+I K NT
Sbjct  56488  EILSTKAL-------------GNMAEELNIFK*NT  56423


 Score = 22.7 bits (47),  Expect(3) = 2e-04, Method: Compositional matrix adjust.
 Identities = 10/12 (83%), Positives = 11/12 (92%), Gaps = 0/12 (0%)
 Frame = -1

Query  151    VEEFLSEKLERI  162
              VEEFLSEKLE +
Sbjct  56420  VEEFLSEKLEHM  56385


 Score = 18.5 bits (36),  Expect(3) = 2e-04, Method: Compositional matrix adjust.
 Identities = 15/22 (68%), Positives = 18/22 (82%), Gaps = 0/22 (0%)
 Frame = -1

Query  11     PAFGLRLLLATVLQAVSAFGAE  32
              PAF LRLLLAT + A+SAFG +
Sbjct  56780  PAFRLRLLLATAV*ALSAFGGQ  56715


> JSZB01003378.1 Manis javanica isolate MP_PG03-UM SCAFFOLD3795, 
whole genome shotgun sequence
Length=811246

 Score = 33.5 bits (75),  Expect = 4.5, Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 25/38 (66%), Gaps = 1/38 (3%)
 Frame = +3

Query  68      RGCCQEEAQFETKKLYAGAILEVCGXKLGRFPQVQAFV  105
               +GCC++E++  + +  A A L  CG KLG+FP + A V
Sbjct  805758  QGCCEKESEHASDQEVA-ARLPGCGSKLGKFPHLSASV  805868



Lambda      K        H        a         alpha
   0.322    0.140    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 35256738846


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40