TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00002945_2.0 # Protein # Sep (O-phosphoserine) tRNA:Sec tRNA
synthase (SEPSECS) # Human

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01003377.1 Manis javanica isolate MP_PG03-UM SCAFFOLD3793, ...    180   1e-45


> JSZB01003377.1 Manis javanica isolate MP_PG03-UM SCAFFOLD3793, 
whole genome shotgun sequence
Length=75892

 Score =   180 bits (456),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 87/102 (85%), Positives = 95/102 (93%), Gaps = 4/102 (4%)
 Frame = +3

Query  404    RVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK  463
              RVVPLGS+QTVSGYTFRGFMSHTNNYPCAYLNAASAIGMK+QDVDLFIKRLD+CLK VRK
Sbjct  65910  RVVPLGSVQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKIQDVDLFIKRLDKCLKTVRK  66089

Query  464    ERSKESD----DNYDKTEDVDIEEMALKLDNVLLDTYQDASS  501
              E++KESD     NYDKTEDV+IEEMALKLDNVLLDT Q++SS
Sbjct  66090  EQNKESDVSGIGNYDKTEDVNIEEMALKLDNVLLDTNQNSSS  66215


 Score =   130 bits (327),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 74/123 (60%), Positives = 76/123 (62%), Gaps = 44/123 (36%)
 Frame = +1

Query  269    GARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYP-----------------  311
              GARVGRIDAF+QSLDKNFMVPVGGAIIAGFNDSFIQEISKMYP                 
Sbjct  53383  GARVGRIDAFIQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGK*TSCSSEKITNKNPF  53562

Query  312    ---------------------------GRASASPSLDVLITLLSLGSNGYKKLLKERKEM  344
                                         GRASASPSLDVLITLLSLGSNGYKKLLKERK  
Sbjct  53563  VHRLL**ILISKAFSPPPECNLFILISGRASASPSLDVLITLLSLGSNGYKKLLKERKVS  53742

Query  345    FSY  347
              F +
Sbjct  53743  FLF  53751


 Score =   118 bits (296),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 53/56 (95%), Positives = 53/56 (95%), Gaps = 0/56 (0%)
 Frame = +3

Query  128    LAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAG  183
                GVHTV NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAG
Sbjct  38433  FVGVHTVTNCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAG  38600


 Score =   117 bits (294),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 53/58 (91%), Positives = 56/58 (97%), Gaps = 0/58 (0%)
 Frame = +2

Query  34     LLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRF  91
              L+  KGKCPE+GWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYR+
Sbjct  35750  LIFLKGKCPEDGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRY  35923


 Score =   106 bits (265),  Expect = 4e-22, Method: Compositional matrix adjust.
 Identities = 49/52 (94%), Positives = 51/52 (98%), Gaps = 0/52 (0%)
 Frame = +3

Query  183    GFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR  234
              GFEPVVIENVLEGDELRTDLKAVEAKVQELGPD +LC+HSTTSCFAPRVPDR
Sbjct  41064  GFEPVVIENVLEGDELRTDLKAVEAKVQELGPDYVLCVHSTTSCFAPRVPDR  41219


 Score = 88.6 bits (218),  Expect = 3e-16, Method: Compositional matrix adjust.
 Identities = 44/52 (85%), Positives = 48/52 (92%), Gaps = 0/52 (0%)
 Frame = +3

Query  83     LVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTV  134
              L+A   +RFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAG++ V
Sbjct  37941  LLAHFLFRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGMYCV  38096


 Score = 81.3 bits (199),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 38/38 (100%), Positives = 38/38 (100%), Gaps = 0/38 (0%)
 Frame = +1

Query  1      MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK  38
              MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK
Sbjct  34855  MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEK  34968


 Score = 77.0 bits (188),  Expect = 1e-12, Method: Compositional matrix adjust.
 Identities = 35/35 (100%), Positives = 35/35 (100%), Gaps = 0/35 (0%)
 Frame = +2

Query  234    RLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ  268
              RLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ
Sbjct  44192  RLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ  44296


 Score = 63.5 bits (153),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 28/33 (85%), Positives = 31/33 (94%), Gaps = 0/33 (0%)
 Frame = +1

Query  342    KEMFSYLSNQIKKLSEAYNERLLHTPHNPISLA  374
              +EMFSYLSNQ+KKLSE Y+ERLLHTPHNPISL 
Sbjct  62680  QEMFSYLSNQLKKLSETYSERLLHTPHNPISLG  62778


 Score = 56.6 bits (135),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 29/35 (83%), Positives = 30/35 (86%), Gaps = 0/35 (0%)
 Frame = +3

Query  374    AMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPL  408
              A+TL TLDE  DKAVTQLGSMLFTRQVSGAR V L
Sbjct  64449  AVTLTTLDEQCDKAVTQLGSMLFTRQVSGAR*VCL  64553



Lambda      K        H        a         alpha
   0.320    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306794422848


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40