TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00000064_2.0 # Protein # Selenophosphate synthetase 2 (SEPHS2) # Human Length=483 Score E Sequences producing significant alignments: (Bits) Value JSZB01033562.1 Manis javanica isolate MP_PG03-UM SCAFFOLD44778,... 731 0.0 JSZB01027477.1 Manis javanica isolate MP_PG03-UM SCAFFOLD35658,... 127 1e-28 > JSZB01033562.1 Manis javanica isolate MP_PG03-UM SCAFFOLD44778, whole genome shotgun sequence Length=28867 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/448 (90%), Positives = 419/448 (94%), Gaps = 3/448 (1%) Frame = +1 Query 26 LTLGRSFSNYRPFEPQALGLSPSWRLTGFSGMKGXGCKVPQEALLKLLAGLTRPDVRPPL 85 L+LGR FS+YR FEPQALGLSPSWRLTGFSGMKG GCKVPQE LLKLLAGLTRPDVRPP Sbjct 17521 LSLGRGFSSYRHFEPQALGLSPSWRLTGFSGMKG*GCKVPQETLLKLLAGLTRPDVRPP- 17697 Query 86 GRGLVGGQEEASQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPLVE 145 +GLVGG EE +QE GLPA P PTFPALGIG+DSCVIPLRHGGLSLVQTTDFFYPLVE Sbjct 17698 -QGLVGGHEEVAQEVGLPASGDPIPTFPALGIGLDSCVIPLRHGGLSLVQTTDFFYPLVE 17874 Query 146 DPYMMGRIACANVLSDLYAMGITECDNmlmllsvsqsmseeeREKVTPLMVKGFRDaaee 205 DPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQ+M+EEEREK+TPLM+KGFRDAAEE Sbjct 17875 DPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQNMTEEEREKITPLMIKGFRDAAEE 18054 Query 206 ggtavtggqtvvNPWIIIGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQW 265 GGTAVTGGQTVVNPWIIIGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQW Sbjct 18055 GGTAVTGGQTVVNPWIIIGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQW 18234 Query 266 LDNPERWNKVKMVVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGH 325 LDNP+RWNK+KMVVSREEVELAYQEAM NMATLNRTAAGLMHTFNAHAATDITGFGILGH Sbjct 18235 LDNPDRWNKIKMVVSREEVELAYQEAMLNMATLNRTAAGLMHTFNAHAATDITGFGILGH 18414 Query 326 SQNLAKQQRNEVSFVIHNLPIIAKMAAVSKASGRFGLLQGTSAETSGGLLICLPREQAAR 385 SQNLAKQQRNEVSFVIHNLPIIAKMA +SKASG FGLLQGTSAETSGGLLICLPREQAAR Sbjct 18415 SQNLAKQQRNEVSFVIHNLPIIAKMATISKASGCFGLLQGTSAETSGGLLICLPREQAAR 18594 Query 386 FCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATAAVLapdssnasse 445 FCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLP GATA LAPD+S+ASSE Sbjct 18595 FCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPHGATATALAPDNSSASSE 18774 Query 446 pssxdeRTEVVWTLEPLSTITDGSQELI 473 SS + T VVWTLEPL TI +Q LI Sbjct 18775 RSS*NG-TAVVWTLEPLHTIMGDAQGLI 18855 > JSZB01027477.1 Manis javanica isolate MP_PG03-UM SCAFFOLD35658, whole genome shotgun sequence Length=97379 Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 62/73 (85%), Positives = 67/73 (92%), Gaps = 1/73 (1%) Frame = +3 Query 301 TAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAVSKASGR- 359 +AAGLMHTFNAHAATDITGFGILGH+QNLAKQQRNEVSFVIHNLP++AKMAAVSKA G Sbjct 41487 SAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNM 41666 Query 360 FGLLQGTSAETSG 372 FGL+ GT ETSG Sbjct 41667 FGLMHGTCPETSG 41705 Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 54/64 (84%), Positives = 58/64 (91%), Gaps = 0/64 (0%) Frame = +3 Query 371 SGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGA 430 SGGLLICLPREQAARFC+EIKS KYGEGHQAWI+GIVEKGNRTARIIDKPR+IEV P+ Sbjct 43581 SGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVG 43760 Query 431 TAAV 434 T V Sbjct 43761 TQNV 43772 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 31/41 (76%), Positives = 36/41 (88%), Gaps = 0/41 (0%) Frame = +1 Query 116 GIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACA 156 GIGMD+CVIPLRHGGLSLVQTTD+ YP+V+DPYMM + C Sbjct 30505 GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMVSLTCC 30627 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/38 (71%), Positives = 33/38 (87%), Gaps = 0/38 (0%) Frame = +3 Query 269 PERWNKVKMVVSREEVELAYQEAMFNMATLNRTAAGLM 306 PE+WNK+K+VV++E+VELAYQEAM NMA LNRT G M Sbjct 38748 PEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTGTGRM 38861 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/68 (65%), Positives = 56/68 (82%), Gaps = 1/68 (1%) Frame = +1 Query 188 REKVTPLMVKGFRDaaeeggtavtggqtvvNPWIIIGGVATVVCQPNEFIM-PDSAVVGD 246 R+KV PL+++GF+DAAEE GT+VTGGQTV+NPWI++GGVAT VCQPNEFIM D + Sbjct 33397 RDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIM*VDFCFLSP 33576 Query 247 VLVLTKPL 254 LVL+ P+ Sbjct 33577 GLVLSLPV 33600 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/32 (81%), Positives = 27/32 (84%), Gaps = 0/32 (0%) Frame = +1 Query 236 FIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLD 267 F PD+AV GDVLVLTKPLGTQVAV HQWLD Sbjct 36757 FFRPDNAVPGDVLVLTKPLGTQVAVAVHQWLD 36852 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 22/28 (79%), Positives = 23/28 (82%), Gaps = 0/28 (0%) Frame = +2 Query 145 EDPYMMGRIACANVLSDLYAMGITECDN 172 P GRIACANVLSDLYAMG+TECDN Sbjct 32369 SSPLFQGRIACANVLSDLYAMGVTECDN 32452 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/47 (49%), Positives = 30/47 (64%), Gaps = 0/47 (0%) Frame = +3 Query 30 RSFSNYRPFEPQALGLSPSWRLTGFSGMKGXGCKVPQEALLKLLAGL 76 R+ S F P++ L S+RLT F+ +KG GCKVPQ+ L KLL L Sbjct 25659 RTMSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESL 25799 Lambda K H a alpha 0.320 0.136 0.410 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 291706172544 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40