Command line: [exonerate -m p2g --showtargetgff -q SEPHS1.fa -t SEPHS1.subseq] Hostname: [ws101069u] C4 Alignment: ------------ Query: SPP00000060_2.0 # Protein # Selenophosphate synthetase 1 (SEPHS1) # Human Target: JSZB01027477.1 Manis javanica isolate MP_PG03-UM SCAFFOLD35658, whole genome shotgun sequence Model: protein2genome:local Raw score: 1635 Query range: 0 -> 321 Target range: 25664 -> 43796 1 : MetSerThrArgGluSerPheAsnProGluSerTyrGluLeuAspLysSerPheArgLeu : 20 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| MetSerThrArgGluSerPheAsnProGluSerTyrGluLeuAspLysSerPheArgLeu 25665 : ATGTCTACACGGGAGTCCTTTAACCCGGAAAGTTATGAATTGGACAAGAGCTTCCGGCTA : 25722 21 : ThrArgPheThrGluLeuLysGlyThrGlyCysLysValProGlnAspValLeuGlnLys : 40 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ThrArgPheThrGluLeuLysGlyThrGlyCysLysValProGlnAspValLeuGlnLys 25723 : ACCAGATTCACTGAACTGAAGGGTACTGGCTGCAAAGTGCCCCAAGATGTCCTGCAGAAA : 25782 41 : LeuLeuGluSerLeuGlnGluAsnHisPheGlnGluAspGluGlnPheLeuGlyAlaVal : 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| LeuLeuGluSerLeuGlnGluAsnHisPheGlnGluAspGluGlnPheLeuGlyAlaVal 25783 : TTGCTGGAATCCTTACAAGAGAACCACTTCCAAGAAGATGAGCAGTTTCTGGGGGCAGTT : 25842 61 : MetProArgLeu{G} >>>> Target Intron 1 >>>> {ly}IleGlyMetAsp : 69 ||||||||||||{|} 4648 bp {||}|||||||||||| MetProArgLeu{G}++ ++{ly}IleGlyMetAsp 25843 : ATGCCAAGGCTT{G}gt.........................ag{GC}ATTGGAATGGAT : 30517 70 : ThrCysValIleProLeuArgHisGlyGlyLeuSerLeuValGlnThrThrAspTyrIle : 89 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ThrCysValIleProLeuArgHisGlyGlyLeuSerLeuValGlnThrThrAspTyrIle 30518 : ACTTGTGTCATTCCTTTGAGGCATGGCGGTCTTTCCTTGGTTCAAACCACGGATTACATT : 30577 90 : TyrProIleValAspAspProTyrMetMet >>>> Target Intron 2 >>>> G : 100 |||||||||||||||||||||||||||||| 1777 bp | TyrProIleValAspAspProTyrMetMet++ ++G 30578 : TATCCTATCGTTGATGACCCTTATATGATGgt.........................agG : 32387 101 : lyArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyValThrGluCysA : 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| lyArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyValThrGluCysA 32388 : GCAGGATAGCATGTGCCAATGTCCTCAGTGACCTCTATGCAATGGGGGTCACAGAATGTG : 32447 121 : spAsnMetLeuMetLeuLeuGlyValSerAsnLysMetThrAspArg >>>> Target : 136 |||||||||||||||||||||||:!!||||||||||||||||||||| 8 spAsnMetLeuMetLeuLeuGlyIleSerAsnLysMetThrAspArg++ 32448 : ACAATATGCTGATGCTCCTTGGAATCAGCAATAAAATGACCGACAGGgt........... : 32497 137 : Intron 3 >>>> GluArgAspLysValMetProLeuIleIleGlnGlyPheLysAs : 150 99 bp |||||||||||||||||||||||||||||||||||||||||||| ++GluArgAspLysValMetProLeuIleIleGlnGlyPheLysAs 32498 : ..............agGAAAGGGATAAAGTGATGCCCCTAATTATACAGGGTTTTAAAGA : 33436 151 : pAlaAlaGluGluAlaGlyThrSerValThrGlyGlyGlnThrValLeuAsnProTrpIl : 170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| pAlaAlaGluGluAlaGlyThrSerValThrGlyGlyGlnThrValLeuAsnProTrpIl 33437 : TGCAGCAGAGGAGGCAGGAACGTCTGTAACAGGTGGCCAAACAGTGTTAAATCCCTGGAT : 33496 171 : eValLeuGlyGlyValAlaThrThrValCysGlnProAsnGluPheIle{Me} >>>> : 187 |||||||||||||||||||||||||||||||||||||||||||||||||{||} eValLeuGlyGlyValAlaThrThrValCysGlnProAsnGluPheIle{Me}++ 33497 : TGTTTTGGGTGGAGTGGCTACAACTGTCTGCCAGCCCAATGAATTTATC{AT}gt..... : 33551 188 : Target Intron 4 >>>> {t}ProAspAsnAlaValProGlyAspValLeuValLe : 199 3216 bp {|}||||||||||||||||||||||||||||||||||| ++{t}ProAspAsnAlaValProGlyAspValLeuValLe 33552 : ....................ag{G}CCAGATAATGCAGTGCCAGGGGATGTGCTTGTGCT : 36799 200 : uThrLysProLeuGlyThrGlnValAlaValAlaValHisGlnTrpLeuAspIle >>> : 218 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| uThrLysProLeuGlyThrGlnValAlaValAlaValHisGlnTrpLeuAspIle++ 36800 : GACAAAACCTCTGGGAACACAAGTGGCTGTGGCCGTACACCAGTGGCTGGACATTgt... : 36858 219 : > Target Intron 5 >>>> ProGluLysTrpAsnLysIleLysLeuValValThr : 229 1892 bp |||||||||||||||||||||||||||||||||||| ++ProGluLysTrpAsnLysIleLysLeuValValThr 36859 : ......................agcctgaaaaatggaataaaattaaactAGTGGTCACC : 38781 230 : GlnGluAspValGluLeuAlaTyrGlnGluAlaMetMetAsnMetAlaArgLeuAsnArg : 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlnGluAspValGluLeuAlaTyrGlnGluAlaMetMetAsnMetAlaArgLeuAsnArg 38782 : CAAGAAGATGTAGAGTTGGCATACCAGGAGGCGATGATGAATATGGCAAGACTCAACAGA : 38841 250 : Thr{G} >>>> Target Intron 6 >>>> {ly}GlyLeuLeuIleCysLeuPro : 258 |||{|} 4737 bp {||}||||||||||||||||||||| Thr{G}++ ++{ly}GlyLeuLeuIleCysLeuPro 38842 : ACA{G}gt.........................ag{GA}GGCCTTCTTATCTGTTTACCA : 43605 259 : ArgGluGlnAlaAlaArgPheCysAlaGluIleLysSerProLysTyrGlyGluGlyHis : 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ArgGluGlnAlaAlaArgPheCysAlaGluIleLysSerProLysTyrGlyGluGlyHis 43606 : CGTGAGCAGGCGGCTCGGTTCTGTGCAGAGATAAAGTCCCCCAAATATGGGGAAGGTCAC : 43665 279 : GlnAlaTrpIleIleGlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspLys : 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlnAlaTrpIleIleGlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspLys 43666 : CAAGCATGGATTATTGGCATCGTAGAAAAGGGCAATCGCACAGCCAGGATCATAGACAAG : 43725 299 : ProArgIleIleGluValAlaProGlnValAlaThrGlnAsnValAsnProThrProGly : 318 ||||||||||||||||||||||||||||||!.!||||||||||||||||||||||||||| ProArgIleIleGluValAlaProGlnValGlyThrGlnAsnValAsnProThrProGly 43726 : CCCCGGATCATCGAAGTGGCACCACAAGTGGGCACTCAAAATGTGAATCCCACACCTGGT : 43785 319 : AlaThrSer : 321 ||||||||| AlaThrSer 43786 : GCCACTTCT : 43796 vulgar: SPP00000060_2.0 0 321 . JSZB01027477.1 25664 43796 + 1635 M 64 192 S 0 1 5 0 2 I 0 4644 3 0 2 S 1 2 M 34 102 5 0 2 I 0 1773 3 0 2 M 36 108 5 0 2 I 0 895 3 0 2 M 51 153 S 0 2 5 0 2 I 0 3212 3 0 2 S 1 1 M 30 90 5 0 2 I 0 1888 3 0 2 M 33 99 S 0 1 5 0 2 I 0 4733 3 0 2 S 1 2 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-11 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01027477.1 exonerate:protein2genome:local gene 25665 43796 1635 + . gene_id 1 ; sequence SPP00000060_2.0 ; gene_orientation + JSZB01027477.1 exonerate:protein2genome:local cds 25665 25857 . + . JSZB01027477.1 exonerate:protein2genome:local exon 25665 25857 . + . insertions 0 ; deletions 0 JSZB01027477.1 exonerate:protein2genome:local splice5 25858 25859 . + . intron_id 1 ; splice_site "GT" JSZB01027477.1 exonerate:protein2genome:local intron 25858 30505 . + . intron_id 1 JSZB01027477.1 exonerate:protein2genome:local splice3 30504 30505 . + . intron_id 0 ; splice_site "AG" JSZB01027477.1 exonerate:protein2genome:local cds 30506 30609 . + . JSZB01027477.1 exonerate:protein2genome:local exon 30506 30609 . + . insertions 0 ; deletions 0 JSZB01027477.1 exonerate:protein2genome:local splice5 30610 30611 . + . intron_id 2 ; splice_site "GT" JSZB01027477.1 exonerate:protein2genome:local intron 30610 32386 . + . intron_id 2 JSZB01027477.1 exonerate:protein2genome:local splice3 32385 32386 . + . intron_id 1 ; splice_site "AG" JSZB01027477.1 exonerate:protein2genome:local cds 32387 32494 . + . JSZB01027477.1 exonerate:protein2genome:local exon 32387 32494 . + . insertions 0 ; deletions 0 JSZB01027477.1 exonerate:protein2genome:local splice5 32495 32496 . + . intron_id 3 ; splice_site "GT" JSZB01027477.1 exonerate:protein2genome:local intron 32495 33393 . + . intron_id 3 JSZB01027477.1 exonerate:protein2genome:local splice3 33392 33393 . + . intron_id 2 ; splice_site "AG" JSZB01027477.1 exonerate:protein2genome:local cds 33394 33548 . + . JSZB01027477.1 exonerate:protein2genome:local exon 33394 33548 . + . insertions 0 ; deletions 0 JSZB01027477.1 exonerate:protein2genome:local splice5 33549 33550 . + . intron_id 4 ; splice_site "GT" JSZB01027477.1 exonerate:protein2genome:local intron 33549 36764 . + . intron_id 4 JSZB01027477.1 exonerate:protein2genome:local splice3 36763 36764 . + . intron_id 3 ; splice_site "AG" JSZB01027477.1 exonerate:protein2genome:local cds 36765 36855 . + . JSZB01027477.1 exonerate:protein2genome:local exon 36765 36855 . + . insertions 0 ; deletions 0 JSZB01027477.1 exonerate:protein2genome:local splice5 36856 36857 . + . intron_id 5 ; splice_site "GT" JSZB01027477.1 exonerate:protein2genome:local intron 36856 38747 . + . intron_id 5 JSZB01027477.1 exonerate:protein2genome:local splice3 38746 38747 . + . intron_id 4 ; splice_site "AG" JSZB01027477.1 exonerate:protein2genome:local cds 38748 38847 . + . JSZB01027477.1 exonerate:protein2genome:local exon 38748 38847 . + . insertions 0 ; deletions 0 JSZB01027477.1 exonerate:protein2genome:local splice5 38848 38849 . + . intron_id 6 ; splice_site "GT" JSZB01027477.1 exonerate:protein2genome:local intron 38848 43584 . + . intron_id 6 JSZB01027477.1 exonerate:protein2genome:local splice3 43583 43584 . + . intron_id 5 ; splice_site "aG" JSZB01027477.1 exonerate:protein2genome:local cds 43585 43796 . + . JSZB01027477.1 exonerate:protein2genome:local exon 43585 43796 . + . insertions 0 ; deletions 0 JSZB01027477.1 exonerate:protein2genome:local similarity 25665 43796 1635 + . alignment_id 1 ; Query SPP00000060_2.0 ; Align 25665 1 192 ; Align 30508 66 102 ; Align 32387 100 108 ; Align 33394 136 153 ; Align 36766 188 90 ; Align 38748 218 99 ; Align 43587 252 210 # --- END OF GFF DUMP --- # -- completed exonerate analysis