TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000060_2.0 # Protein # Selenophosphate synthetase 1 (SEPHS1) #
Human

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01033562.1 Manis javanica isolate MP_PG03-UM SCAFFOLD44778,...    367   6e-112
  JSZB01027477.1 Manis javanica isolate MP_PG03-UM SCAFFOLD35658,...    149   8e-37 


> JSZB01033562.1 Manis javanica isolate MP_PG03-UM SCAFFOLD44778, 
whole genome shotgun sequence
Length=28867

 Score =   367 bits (941),  Expect = 6e-112, Method: Compositional matrix adjust.
 Identities = 177/281 (63%), Positives = 212/281 (75%), Gaps = 18/281 (6%)
 Frame = +1

Query  1      MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGA-  59
               S+   F P++  L  S+RLT F+ +KG GCKVPQ+ L KLL  L     +  +  +G  
Sbjct  17539  FSSYRHFEPQALGLSPSWRLTGFSGMKG*GCKVPQETLLKLLAGLTRPDVRPPQGLVGGH  17718

Query  60     -----------------VMPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRI  102
                                 P LGIG+D+CVIPLRHGGLSLVQTTD+ YP+V+DPYMMGRI
Sbjct  17719  EEVAQEVGLPASGDPIPTFPALGIGLDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRI  17898

Query  103    ACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGG  162
              ACANVLSDLYAMG+TECDNMLMLL VS  MT+ ER+K+ PL+I+GF+DAAEE GT+VTGG
Sbjct  17899  ACANVLSDLYAMGITECDNMLMLLSVSQNMTEEEREKITPLMIKGFRDAAEEGGTAVTGG  18078

Query  163    QTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWN  222
              QTV+NPWI++GGVAT VCQPNEFIMPD+AV GDVLVLTKPLGTQVAV  HQWLD P++WN
Sbjct  18079  QTVVNPWIIIGGVATVVCQPNEFIMPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPDRWN  18258

Query  223    KIKLVVTQEDVELAYQEAMMNMARLNRTGGLLICLPREQAA  263
              KIK+VV++E+VELAYQEAM+NMA LNRT   L+      AA
Sbjct  18259  KIKMVVSREEVELAYQEAMLNMATLNRTAAGLMHTFNAHAA  18381


 Score =   118 bits (295),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 53/61 (87%), Positives = 57/61 (93%), Gaps = 0/61 (0%)
 Frame = +1

Query  250    TGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVA  309
              +GGLLICLPREQAARFC+EIKS KYGEGHQAWI+GIVEKGNRTARIIDKPR+IEV P  A
Sbjct  18550  SGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPHGA  18729

Query  310    T  310
              T
Sbjct  18730  T  18732


> JSZB01027477.1 Manis javanica isolate MP_PG03-UM SCAFFOLD35658, 
whole genome shotgun sequence
Length=97379

 Score =   149 bits (375),  Expect = 8e-37, Method: Compositional matrix adjust.
 Identities = 75/96 (78%), Positives = 81/96 (84%), Gaps = 2/96 (2%)
 Frame = +3

Query  228    VTQEDVELAYQEAMMNMARL--NRTGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGI  285
              +++E    AY+E    +A      +GGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGI
Sbjct  43509  ISREWDRSAYREHHS*LATFLFPLSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGI  43688

Query  286    VEKGNRTARIIDKPRIIEVAPQVATQNVNPTPGATS  321
              VEKGNRTARIIDKPRIIEVAPQV TQNVNPTPGATS
Sbjct  43689  VEKGNRTARIIDKPRIIEVAPQVGTQNVNPTPGATS  43796


 Score =   138 bits (347),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 65/66 (98%), Positives = 66/66 (100%), Gaps = 0/66 (0%)
 Frame = +3

Query  1      MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAV  60
              MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAV
Sbjct  25665  MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAV  25844

Query  61     MPRLGI  66
              MPRLG+
Sbjct  25845  MPRLGM  25862


 Score =   109 bits (272),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 52/52 (100%), Positives = 52/52 (100%), Gaps = 0/52 (0%)
 Frame = +1

Query  136    ERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIM  187
              ERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIM
Sbjct  33394  ERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIM  33549


 Score = 80.5 bits (197),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 36/41 (88%), Positives = 37/41 (90%), Gaps = 0/41 (0%)
 Frame = +1

Query  65     GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACA  105
              GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMM  + C 
Sbjct  30505  GIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMVSLTCC  30627


 Score = 78.6 bits (192),  Expect = 5e-14, Method: Compositional matrix adjust.
 Identities = 36/42 (86%), Positives = 37/42 (88%), Gaps = 0/42 (0%)
 Frame = +2

Query  94     DDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDR  135
                P   GRIACANVLSDLYAMGVTECDNMLMLLG+SNKMTDR
Sbjct  32369  SSPLFQGRIACANVLSDLYAMGVTECDNMLMLLGISNKMTDR  32494


 Score = 72.8 bits (177),  Expect = 4e-12, Method: Compositional matrix adjust.
 Identities = 34/34 (100%), Positives = 34/34 (100%), Gaps = 0/34 (0%)
 Frame = +3

Query  218    PEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTG  251
              PEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTG
Sbjct  38748  PEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTG  38849


 Score = 66.2 bits (160),  Expect = 7e-10, Method: Compositional matrix adjust.
 Identities = 31/33 (94%), Positives = 31/33 (94%), Gaps = 0/33 (0%)
 Frame = +1

Query  185    FIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDI  217
              F  PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI
Sbjct  36757  FFRPDNAVPGDVLVLTKPLGTQVAVAVHQWLDI  36855



Lambda      K        H        a         alpha
   0.319    0.136    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160180139343


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40