Command line: [exonerate -m p2g --showtargetgff -q SELENOW2.aa.fa -t SELENOW2_JSZB01001359.1.subseq.fa]
Hostname: [ws101066u]

C4 Alignment:
------------
         Query: SPP00000127_2.0 # Protein # Selenoprotein W2 (SELENOW2) # Human 
        Target: JSZB01001359.1:subseq(200000,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD1497, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 535
   Query range: 0 -> 115
  Target range: 57521 -> 56552

     1 : MetSerGlyGluProGlyGlnThrSerValAlaProProProGluGluValGluProGly :    20
         ||||||||||||! !|||! !.!!||||||||||||||||||! !|||:!!|||||||||
         MetSerGlyGluGlnGlyProAlaSerValAlaProProProGlyGluIleGluProGly
 57521 : ATGAGCGGGGAGCAGGGGCCGGCGTCTGTAGCGCCCCCTCCCGGGGAGATCGAACCGGGC : 57464

    21 : SerGlyValArgIleValValGluTyr{Cy}  >>>> Target Intron 1 >>>>   :    30
          !!||||||||||||||||||||||||{||}            104 bp           
         ArgGlyValArgIleValValGluTyr{Cy}++                         ++
 57463 : CGTGGGGTCCGCATTGTGGTGGAGTAC{TG}gt.........................ag : 57330

    31 : {s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaValLysGluGln :    49
         {|}|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         {s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaValLysGluGln
 57329 : {T}GAACCTTGCGGCTTCGAGGCGACCTACCTGGAGCTGGCGAGTGCCGTGAAGGAGCAG : 57273

    50 : TyrProGlyIleGluIleGluSerArgLeuGlyGlyThr{G}  >>>> Target Intr :    63
         |||||||||||||||||||||||||||||||||||||||{|}            437 bp
         TyrProGlyIleGluIleGluSerArgLeuGlyGlyThr{G}++                
 57272 : TATCCTGGCATTGAGATCGAGTCACGTCTCGGGGGCACA{G}gt................ : 57228

    64 : on 2 >>>>  {ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPheSerLysLeu :    78
                    {||}|||||||||||||||||||||||||||||||||||||||||||||
                  ++{ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPheSerLysLeu
 57227 : .........ag{gg}GCTTTTGAGATTGAGATCAATGGACAGCTGGTGTTCTCCAAGCTG : 56749

    79 : GluAsnGlyGlyPheProTyrGluLysAsp  >>>> Target Intron 3 >>>>  L :    89
         ||||||||||||||||||||||||||||||            83 bp            |
         GluAsnGlyGlyPheProTyrGluLysAsp++                         ++L
 56748 : GAGAATGGGGGCTTTCCTTATGAGAAAGATgt.........................agC : 56633

    90 : euIleGluAlaIleArgArgAlaSerAsnGlyGluThrLeuGluLysIleThrAsnSerA :   109
         ||||||||||||||||||||||||||||||||||| !!||||||||||||||||||||||
         euIleGluAlaIleArgArgAlaSerAsnGlyGluProLeuGluLysIleThrAsnSerA
 56632 : TCATTGAGGCCATCCGAAGAGCCAGTAACGGAGAACCCCTAGAAAAGATCACCAACAGCC : 56573

   110 : rgProProCysValIleLeu :   115
         ||||||||||||||||||||
         rgProProCysValIleLeu
 56572 : GGCCTCCCTGTGTCATCCTG : 56553

vulgar: SPP00000127_2.0 0 115 . JSZB01001359.1:subseq(200000,100000) 57521 56552 - 535 M 29 87 S 0 2 5 0 2 I 0 100 3 0 2 S 1 1 M 32 96 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 25 75 5 0 2 I 0 79 3 0 2 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-11
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	gene	56553	57521	535	-	.	gene_id 1 ; sequence SPP00000127_2.0 ; gene_orientation +
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	cds	57433	57521	.	-	.	
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	exon	57433	57521	.	-	.	insertions 0 ; deletions 0
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	splice5	57431	57432	.	-	.	intron_id 1 ; splice_site "GT"
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	intron	57329	57432	.	-	.	intron_id 1
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	splice3	57329	57330	.	-	.	intron_id 0 ; splice_site "AG"
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	cds	57231	57328	.	-	.	
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	exon	57231	57328	.	-	.	insertions 0 ; deletions 0
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	splice5	57229	57230	.	-	.	intron_id 2 ; splice_site "GT"
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	intron	56794	57230	.	-	.	intron_id 2
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	splice3	56794	56795	.	-	.	intron_id 1 ; splice_site "ag"
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	cds	56717	56793	.	-	.	
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	exon	56717	56793	.	-	.	insertions 0 ; deletions 0
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	splice5	56715	56716	.	-	.	intron_id 3 ; splice_site "GT"
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	intron	56634	56716	.	-	.	intron_id 3
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	splice3	56634	56635	.	-	.	intron_id 2 ; splice_site "AG"
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	cds	56553	56633	.	-	.	
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	exon	56553	56633	.	-	.	insertions 0 ; deletions 0
JSZB01001359.1:subseq(200000,100000)	exonerate:protein2genome:local	similarity	56553	57521	535	-	.	alignment_id 1 ; Query SPP00000127_2.0 ; Align 57522 1 87 ; Align 57328 31 96 ; Align 56792 64 75 ; Align 56634 89 81
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis