Command line: [exonerate -m p2g --showtargetgff -q SELENOW1.aa.fa -t SELENOW1_JSZB01009414.1.subseq.fa]
Hostname: [ws101066u]

C4 Alignment:
------------
         Query: SPP00000124_2.0 # Protein # Selenoprotein W1 (SELENOW1) # Human 
        Target: JSZB01009414.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD11013, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 134
   Query range: 6 -> 52
  Target range: 28578 -> 28440

     7 : ValValTyrCysGlyAlaUnkGlyTyrLysSerLysTyrLeuGlnLeuLysLysLysLeu :    26
         ||||||:!!|||||||||   ! !||||||! !||||||!!!||||||!!.|||||||||
         ValValHisCysGlyAla***AspTyrLysTyrLysTyrPheGlnLeuAsnLysLysLeu
 28578 : GTAGTACACTGTGGTGCTTGAGACTACAAATACAAGTATTTTCAGCTCAATAAGAAGTTA : 28521

    27 : GluAspGluPheProGlyArgLeuAspIleCysGlyGluGlyThrProGlnAlaThrGly :    46
         |||! ! !!|||||| !!!.!|||! !! ! !!|||:!!! !|||||||||||||||  !
         GluGly***PheProArgHisLeuGlyThrSerGlyLysValThrProGlnAlaThrLeu
 28520 : GAAGGTTAGTTTCCCAGACACTTGGGTACCAGTGGCAAGGTAACACCACAGGCCACTTTG : 28461

    47 : PhePheGluValMetVal :    52
         |||||||||||||||:!!
         PhePheGluValMetLeu
 28460 : TTCTTTGAAGTGATGTTG : 28441

vulgar: SPP00000124_2.0 6 52 . JSZB01009414.1:subseq(0,100000) 28578 28440 - 134 M 46 138
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-11
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JSZB01009414.1:subseq(0,100000)	exonerate:protein2genome:local	gene	28441	28578	134	-	.	gene_id 1 ; sequence SPP00000124_2.0 ; gene_orientation .
JSZB01009414.1:subseq(0,100000)	exonerate:protein2genome:local	cds	28441	28578	.	-	.	
JSZB01009414.1:subseq(0,100000)	exonerate:protein2genome:local	exon	28441	28578	.	-	.	insertions 0 ; deletions 0
JSZB01009414.1:subseq(0,100000)	exonerate:protein2genome:local	similarity	28441	28578	134	-	.	alignment_id 1 ; Query SPP00000124_2.0 ; Align 28579 7 138
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis