Command line: [exonerate -m p2g --showtargetgff -q SELENOU.fa -t SELENOU.subseq]
Hostname: [ws101098U]

C4 Alignment:
------------
         Query: SPP00000116_2.0 # Protein # Selenoprotein U3 (SELENOU3) # Human 
        Target: JSZB01006448.1:subseq(0,100000) Manis javanica isolate MP_PG03-UM SCAFFOLD7381, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 108
   Query range: 84 -> 137
  Target range: 43812 -> 45307

    85 : SerSerLeuAlaGlyLeuLeuAspGlnHisGlyValArgLeuValGlyValGlyProGlu :   104
         |||||||||  !.!!|||! !||||||||||||||| !!|||||| !!:!! !!  !|||
         SerSerLeuArgSerLeuArgAspGlnHisGlyValCysLeuValArgLeuTrpCysGlu
 43813 : AGCAGCCTCAGGAGCCTCCGGGACCAGCACGGCGTGTGCCTGGTGCGCTTGTGGTGCGAG : 43870

   105 : AlaLeuGlyLeuGlnGluPheLeuAspGlyAspTyrPheAlaGly{G}  >>>> Targe :   120
         |||! !  !|||!:!|||||||||||||||||||||||||||   {|}           1
         AlaProHisLeuArgGluPheLeuAspGlyAspTyrPheAla---{G}+-          
 43871 : GCCCCGCACCTGCGGGAGTTTCTGGACGGCGACTACTTCGCA---{G}ga.......... : 43918

   121 : t Intron 1 >>>>  {lu}LeuTyrLeuAspGluSerLysGlnLeuTyrLysGluLeu :   133
         339 bp           {||}|||!  ! !!  ! !! !!:!|||!!!||||||||||||
                        ++{lu}LeuLeuProGlyGly***ArgGlnPheTyrLysGluLeu
 43919 : ...............ag{AA}CTCTTACCTGGAGGATAGAGGCAGTTCTACAAGGAGCTG : 45293

   134 : GlyPheLysArg :   137
         |||! !||||||
         GlyCysLysArg
 45294 : GGCTGCAAGCGG : 45307

vulgar: SPP00000116_2.0 84 137 . JSZB01006448.1:subseq(0,100000) 43812 45307 + 108 M 34 102 G 1 0 S 0 1 5 0 2 I 0 1335 3 0 2 S 1 2 M 17 51
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-09
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JSZB01006448.1:subseq(0,100000)	exonerate:protein2genome:local	gene	43813	45307	108	+	.	gene_id 1 ; sequence SPP00000116_2.0 ; gene_orientation +
JSZB01006448.1:subseq(0,100000)	exonerate:protein2genome:local	cds	43813	43915	.	+	.	
JSZB01006448.1:subseq(0,100000)	exonerate:protein2genome:local	exon	43813	43915	.	+	.	insertions 0 ; deletions 1
JSZB01006448.1:subseq(0,100000)	exonerate:protein2genome:local	splice5	43916	43917	.	+	.	intron_id 1 ; splice_site "GA"
JSZB01006448.1:subseq(0,100000)	exonerate:protein2genome:local	intron	43916	45254	.	+	.	intron_id 1
JSZB01006448.1:subseq(0,100000)	exonerate:protein2genome:local	splice3	45253	45254	.	+	.	intron_id 0 ; splice_site "AG"
JSZB01006448.1:subseq(0,100000)	exonerate:protein2genome:local	cds	45255	45307	.	+	.	
JSZB01006448.1:subseq(0,100000)	exonerate:protein2genome:local	exon	45255	45307	.	+	.	insertions 0 ; deletions 0
JSZB01006448.1:subseq(0,100000)	exonerate:protein2genome:local	similarity	43813	45307	108	+	.	alignment_id 1 ; Query SPP00000116_2.0 ; Align 43813 85 102 ; Align 45257 121 51
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis