TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000116_2.0 # Protein # Selenoprotein U3 (SELENOU3) # Human

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01006448.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7381, ...  45.8    0.001
  JSZB01001214.1 Manis javanica isolate MP_PG03-UM SCAFFOLD1338, ...  41.2    0.032


> JSZB01006448.1 Manis javanica isolate MP_PG03-UM SCAFFOLD7381, 
whole genome shotgun sequence
Length=120346

 Score = 45.8 bits (107),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 24/36 (67%), Positives = 26/36 (72%), Gaps = 0/36 (0%)
 Frame = +1

Query  85     SSLAGLLDQHGVRLVGVGPEALGLQEFLDGDYFAGE  120
              SSL  L DQHGV LV +  EA  L+EFLDGDYFAG 
Sbjct  43813  SSLRSLRDQHGVCLVRLWCEAPHLREFLDGDYFAGN  43920


 Score = 43.1 bits (100),  Expect = 0.006, Method: Compositional matrix adjust.
 Identities = 23/38 (61%), Positives = 25/38 (66%), Gaps = 4/38 (11%)
 Frame = +2

Query  66     VAGLRRFGCVVC----RWIAQDLSSLAGLLDQHGVRLV  99
              V GLR FGC+      RW+A DLSSL  L DQHGV LV
Sbjct  43697  VXGLRSFGCMWSPPRSRWVAGDLSSLRSLRDQHGVCLV  43810


 Score = 39.3 bits (90),  Expect = 0.11, Method: Compositional matrix adjust.
 Identities = 18/24 (75%), Positives = 20/24 (83%), Gaps = 0/24 (0%)
 Frame = +3

Query  52     AVELRSLWREHACVVAGLRRFGCV  75
              AVELRSLW+E A V AGLR FGC+
Sbjct  43611  AVELRSLWQEQARVAAGLRSFGCM  43682


> JSZB01001214.1 Manis javanica isolate MP_PG03-UM SCAFFOLD1338, 
whole genome shotgun sequence
Length=551697

 Score = 41.2 bits (95),  Expect = 0.032, Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (57%), Gaps = 0/51 (0%)
 Frame = -3

Query  56      RSLWREHACVVAGLRRFGCVVCRWIAQDLSSLAGLLDQHGVRLVGVGPEAL  106
               + LW +   V+  + R GC +CR  A+DLSSL   LD+ GV L  V  E +
Sbjct  239797  KELWEKSGAVIMAVWRPGCFLCREEAEDLSSLKPKLDELGVPLYAVVKEQI  239645



Lambda      K        H        a         alpha
   0.319    0.136    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85574139198


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40