TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000114_2.0 # Protein # Selenoprotein U2 (SELENOU2) # Human

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01000054.1 Manis javanica isolate MP_PG03-UM SCAFFOLD59, wh...  90.5    3e-18
  JSZB01009247.1 Manis javanica isolate MP_PG03-UM SCAFFOLD10804,...  37.4    0.48 


> JSZB01000054.1 Manis javanica isolate MP_PG03-UM SCAFFOLD59, 
whole genome shotgun sequence
Length=163899

 Score = 90.5 bits (223),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 43/58 (74%), Positives = 50/58 (86%), Gaps = 6/58 (10%)
 Frame = +3

Query  140   SGQSPHIKSNLLSGSLQSLWRAVTGPLFDFQGDPAQQGGTLILGPGN------NIHFI  191
             SG+SPH+KSN+LSGS++SLWRAVTGPLFDFQGDPAQQGGTLILGPG        +HF+
Sbjct  4851  SGKSPHVKSNILSGSIRSLWRAVTGPLFDFQGDPAQQGGTLILGPGKPQSPCPAVHFL  5024


 Score = 79.0 bits (193),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 38/42 (90%), Positives = 41/42 (98%), Gaps = 1/42 (2%)
 Frame = +3

Query  185   GNNIHFIHRDRNRLDHKPINSVLQLVGVQHVNFTNRPSVIHV  226
             GNNIHFIHRDRNRLDHKPINSVLQLVGV+HV+FT RP+VIHV
Sbjct  6843  GNNIHFIHRDRNRLDHKPINSVLQLVGVEHVDFT-RPAVIHV  6965


 Score = 78.6 bits (192),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 35/38 (92%), Positives = 38/38 (100%), Gaps = 0/38 (0%)
 Frame = +1

Query  106   PFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASSGQS  143
             PFCKLTGYS+EIYVDPEREIYKRLGMKRGEEIASSG++
Sbjct  1042  PFCKLTGYSYEIYVDPEREIYKRLGMKRGEEIASSGKT  1155


 Score = 44.7 bits (104),  Expect = 0.002, Method: Compositional matrix adjust.
 Identities = 19/21 (90%), Positives = 20/21 (95%), Gaps = 0/21 (0%)
 Frame = +3

Query  67   LCYICKEYVEDLAKIPRSFLQ  87
            LCYICKEYVEDLA+IP SFLQ
Sbjct  186  LCYICKEYVEDLAQIPASFLQ  248


 Score = 40.4 bits (93),  Expect = 0.060, Method: Compositional matrix adjust.
 Identities = 18/20 (90%), Positives = 20/20 (100%), Gaps = 0/20 (0%)
 Frame = +2

Query  86   LQEANVTLIVIGQSSYHHIE  105
            L+EANV+LIVIGQSSYHHIE
Sbjct  830  LKEANVSLIVIGQSSYHHIE  889


> JSZB01009247.1 Manis javanica isolate MP_PG03-UM SCAFFOLD10804, 
whole genome shotgun sequence
Length=346670

 Score = 37.4 bits (85),  Expect = 0.48, Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 0/41 (0%)
 Frame = -3

Query  130    GMKRGEEIASSGQSPHIKSNLLSGSLQSLWRAVTGPLFDFQ  170
              GM  GEE+   G+ P +   LLS SLQS W+      FDFQ
Sbjct  82833  GMGNGEEL*QLGKEPQLDPGLLSASLQSAWQHQLSVQFDFQ  82711



Lambda      K        H        a         alpha
   0.320    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 83896214900


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40