TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa 80,669 sequences; 2,547,379,330 total letters Query= SPP00000109_2.0 # Protein # Selenoprotein U1 (SELENOU1) # Human Length=229 Score E Sequences producing significant alignments: (Bits) Value JSZB01001214.1 Manis javanica isolate MP_PG03-UM SCAFFOLD1338, ... 254 2e-74 JSZB01001942.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2167, ... 110 8e-25 JSZB01002806.1 Manis javanica isolate MP_PG03-UM SCAFFOLD3153, ... 34.7 3.4 JSZB01016330.1 Manis javanica isolate MP_PG03-UM SCAFFOLD19818,... 33.9 6.2 > JSZB01001214.1 Manis javanica isolate MP_PG03-UM SCAFFOLD1338, whole genome shotgun sequence Length=551697 Score = 254 bits (650), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 162/247 (66%), Positives = 174/247 (70%), Gaps = 18/247 (7%) Frame = -3 Query 1 MSFLQDPSFFTMGMWSIgagalgaaalalllaNTDVFLSKPQKAALEYLEDIDLKTLEKE 60 MSFLQD SFFT+GMWSIG GALGAAALALLLANTDVFLSK QKA LEYLEDIDLKTLEKE Sbjct 239995 MSFLQDTSFFTIGMWSIGVGALGAAALALLLANTDVFLSKTQKATLEYLEDIDLKTLEKE 239816 Query 61 PRTFKAKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTE 120 PRTFKAKELWEK+GAVIMAV RPGCFLCREEA DLSSLK LD+LGVPLYAVVKE IRTE Sbjct 239815 PRTFKAKELWEKSGAVIMAVWRPGCFLCREEAEDLSSLKPKLDELGVPLYAVVKEQIRTE 239636 Query 121 VKD-FQPYFKGE------------IFLDE-----KKKFYGPQRRKMMFMGFIRLGVWYNF 162 V P GE +F K+K + + G G Sbjct 239635 VXAGCPPLCSGEGAD*D*SGGLPALFQRRNLPG*KEKVLWSPKAEDDVSGICPSGCLVQL 239456 Query 163 FRAWNGGFSGNLEGEGFILGGVFVVGSGKQGILLEHREKEFGDKVNLLSVLEAAKMIKPQ 222 NLEGEGFILGGVF+VGSGK+GILLEH+EKEFGDK +SVLE A+ IK Q Sbjct 239455 LPGLEWRHLWNLEGEGFILGGVFMVGSGKEGILLEHQEKEFGDKAKPISVLEVARKIKVQ 239276 Query 223 TLASEKK 229 T ASEKK Sbjct 239275 TSASEKK 239255 > JSZB01001942.1 Manis javanica isolate MP_PG03-UM SCAFFOLD2167, whole genome shotgun sequence Length=112991 Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 56/68 (82%), Positives = 59/68 (87%), Gaps = 1/68 (1%) Frame = -1 Query 125 QPYFKGEIFLDEKKKFYGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFILGGV 184 Q KG F +KK FYGPQRRKMMF+GF+RLGVWYNFFRA NGGFSGNLEGEGFILGGV Sbjct 24761 QAIHKGAFFFLQKK-FYGPQRRKMMFLGFVRLGVWYNFFRARNGGFSGNLEGEGFILGGV 24585 Query 185 FVVGSGKQ 192 FVVGSGKQ Sbjct 24584 FVVGSGKQ 24561 Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/59 (93%), Positives = 55/59 (93%), Gaps = 0/59 (0%) Frame = -2 Query 1 MSFLQDPSFFTMGMWSIgagalgaaalalllaNTDVFLSKPQKAALEYLEDIDLKTLEK 59 MSFLQD SFFTMGMWSI AGALGAAALALLLANTDVFLSK QKA LEYLEDIDLKTLEK Sbjct 30541 MSFLQDTSFFTMGMWSICAGALGAAALALLLANTDVFLSKTQKATLEYLEDIDLKTLEK 30365 Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/59 (71%), Positives = 44/59 (75%), Gaps = 5/59 (8%) Frame = -2 Query 80 VRRPGCF-LCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQPYFKGEIFLDEK 137 V R GC LC E LK LD+LGVPLYAVVKE IRTEV+DFQPYFKGEIFLDEK Sbjct 25507 VGRAGCPPLCSGEG----XLKPKLDELGVPLYAVVKEQIRTEVEDFQPYFKGEIFLDEK 25343 Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 30/34 (88%), Positives = 33/34 (97%), Gaps = 0/34 (0%) Frame = -2 Query 60 EPRTFKAKELWEKNGAVIMAVRRPGCFLCREEAA 93 EPRTFKAK+LWEK+GAVIMAVRRPGCFLCRE +A Sbjct 28615 EPRTFKAKKLWEKSGAVIMAVRRPGCFLCREVSA 28514 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/37 (81%), Positives = 31/37 (84%), Gaps = 0/37 (0%) Frame = -2 Query 193 GILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK 229 GILLEHREKEFGDKVN SVLEAA+ IK QT ASE K Sbjct 21796 GILLEHREKEFGDKVNPTSVLEAARKIKVQTSASETK 21686 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/30 (77%), Positives = 25/30 (83%), Gaps = 2/30 (7%) Frame = -3 Query 85 CFLCREEAADLSSLKSMLDQLGVPLYAVVK 114 C L +EAADLSSLK LD+LGVPLYAVVK Sbjct 25551 CLL--QEAADLSSLKPKLDELGVPLYAVVK 25468 > JSZB01002806.1 Manis javanica isolate MP_PG03-UM SCAFFOLD3153, whole genome shotgun sequence Length=129782 Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = -1 Query 56 TLEKEPRTFKAKELWEKNGAVIMAVRRPGCFLCREEAADLSSL 98 TL PRT K G A+ RPGCF+CREE + SS+ Sbjct 16448 TL*AGPRTLKVPSRTTIQGNK-RAI*RPGCFICREEISQHSSI 16323 > JSZB01016330.1 Manis javanica isolate MP_PG03-UM SCAFFOLD19818, whole genome shotgun sequence Length=69851 Score = 33.9 bits (76), Expect = 6.2, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query 39 SKPQKAALEYL-EDIDLKTLEKEPRTFKAKELWEKNGAVIMAV 80 ++PQ L L + I LE PRT KAK+LW ++G + Sbjct 27462 ARPQSHGLRILGKRIQTSILESSPRTPKAKDLWHRSGCSPLPT 27590 Lambda K H a alpha 0.322 0.140 0.420 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 86413101347 Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa Posted date: Oct 21, 2016 4:42 PM Number of letters in database: 2,547,379,330 Number of sequences in database: 80,669 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40