Command line: [exonerate -m p2g --showtargetgff -q SELENOT.aa.fa -t SELENOT_JSZB01003988.1.subseq.fa] Hostname: [ws101065u] C4 Alignment: ------------ Query: SPP00000106_2.0 # Protein # Selenoprotein T (SELENOT) # Human Target: JSZB01003988.1:subseq(427781,68193) Manis javanica isolate MP_PG03-UM SCAFFOLD4524, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 976 Query range: 0 -> 195 Target range: 67502 -> 49999 1 : MetArgLeuLeuLeuLeuLeuLeuValAlaAlaSerAlaMetValArgSerGluAlaSer : 20 ||||||||||||||||||||||||||||||||||||||||||:!!||||||!!:|||||| MetArgLeuLeuLeuLeuLeuLeuValAlaAlaSerAlaMetIleArgSerAspAlaSer 67502 : ATGAGGCTTCTGCTACTTCTCCTAGTGGCGGCGTCGGCGATGATCCGGAGCGATGCCTCG : 67445 21 : AlaAsnLeuGlyGlyValProSerLysArgLeuLysMetGlnTyrAlaThrGlyProLeu : 40 |||||||||||||||:!!|||||||||||||||||||||||||||||||||||||||||| AlaAsnLeuGlyGlyMetProSerLysArgLeuLysMetGlnTyrAlaThrGlyProLeu 67444 : GCCAACCTGGGCGGCATGCCTAGCAAGAGATTAAAGATGCAGTACGCTACGGGGCCGCTG : 67385 41 : LeuLysPheGlnIle{Cy} >>>> Target Intron 1 >>>> {s}ValSerUnk : 49 |||||||||||||||{||} 12897 bp {|}|||||| LeuLysPheGlnIle{Cy}++ ++{s}ValSer*** 67384 : CTCAAGTTCCAGATT{TG}gt.........................ag{T}GTTTCCTGA : 54461 50 : GlyTyrArgArgValPheGluGluTyrMetArgValIleSerGlnArgTyrProAspIle : 69 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlyTyrArgArgValPheGluGluTyrMetArgValIleSerGlnArgTyrProAspIle 54460 : GGATATAGGCGGGTGTTTGAAGAGTACATGCGGGTTATTAGCCAGCGGTACCCAGACATC : 54401 70 : ArgIleGluGlyGluAsnTyrLeuProGlnProIleTyr{Ar} >>>> Target Int : 83 |||||||||||||||||||||||||||||||||||||||{||} 561 b ArgIleGluGlyGluAsnTyrLeuProGlnProIleTyr{Ar}++ 54400 : CGCATTGAAGGAGAGAATTACCTTCCTCAGCCAATATAT{AG}gt............... : 54355 84 : ron 2 >>>> {g}HisIleAlaSerPheLeuSerValPheLysLeuValLeuIleGly : 98 p {|}||||||||||||||||||||||||||||||||||||||||||||| ++{g}HisIleAlaSerPheLeuSerValPheLysLeuValLeuIleGly 54354 : ..........ag{a}cACATAGCATCTTTCCTGTCAGTCTTCAAACTAGTATTAATAGGC : 53753 99 : LeuIleIleValGlyLysAspProPheAlaPhePheGlyMetGlnAlaProSerIleTrp : 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| LeuIleIleValGlyLysAspProPheAlaPhePheGlyMetGlnAlaProSerIleTrp 53752 : TTAATAATTGTTGGCAAGgatccttttgctttctttggcaTGCAAGCTCCTAGCATCTGG : 53693 119 : GlnTrpGlyGlnGluAsnLys >>>> Target Intron 3 >>>> ValTyrAlaC : 129 ||||||||||||||||||||| 1972 bp |||||||||| GlnTrpGlyGlnGluAsnLys++ ++ValTyrAlaC 53692 : CAGTGGGGCCAAGAAAATAAGgt.........................agGTCTATGCAT : 51688 130 : ysMetMetValPhePheLeuSerAsnMetIleGluAsnGlnCysMetSerThrGlyAlaP : 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ysMetMetValPhePheLeuSerAsnMetIleGluAsnGlnCysMetSerThrGlyAlaP 51687 : GTATGATGGTTTTCTTCTTGAGCAACATGATTGAGAACCAGTGTATGTCAACAGGTGCAT : 51628 150 : heGluIleThrLeuAsn{A} >>>> Target Intron 4 >>>> {sp}ValProV : 158 |||||||||||||||||{|} 1488 bp {||}||||||| heGluIleThrLeuAsn{A}++ ++{sp}ValProV 51627 : TTGAGATAACTTTGAAT{G}gt.........................ag{at}gtaCCTG : 50113 159 : alTrpSerLysLeuGluSerGlyHisLeuProSerMetGlnGlnLeuValGlnIleLeuA : 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| alTrpSerLysLeuGluSerGlyHisLeuProSerMetGlnGlnLeuValGlnIleLeuA 50112 : TATGGTCTAAGCTGGAATCTGGTCACCTTCCATCCATGCAACAGCTTGTTCAAATTCTTG : 50053 179 : spAsnGluMetLysLeuAsnValHisMetAspSerIleProHisHisArgSer : 195 ||||||||||||||||||||||||||||||||||||||||||||||||||||| spAsnGluMetLysLeuAsnValHisMetAspSerIleProHisHisArgSer 50052 : ACAATGAAATGAAGCTTAATGTGCATATGGATTCAATCCCACATCATCGATCG : 50000 vulgar: SPP00000106_2.0 0 195 . JSZB01003988.1:subseq(427781,68193) 67502 49999 - 976 M 45 135 S 0 2 5 0 2 I 0 12893 3 0 2 S 1 1 M 36 108 S 0 2 5 0 2 I 0 557 3 0 2 S 1 1 M 42 126 5 0 2 I 0 1968 3 0 2 M 29 87 S 0 1 5 0 2 I 0 1484 3 0 2 S 1 2 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-09 ##type DNA # # # seqname source feature start end score strand frame attributes # JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local gene 50000 67502 976 - . gene_id 1 ; sequence SPP00000106_2.0 ; gene_orientation + JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local cds 67366 67502 . - . JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local exon 67366 67502 . - . insertions 0 ; deletions 0 JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local splice5 67364 67365 . - . intron_id 1 ; splice_site "GT" JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local intron 54469 67365 . - . intron_id 1 JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local splice3 54469 54470 . - . intron_id 0 ; splice_site "ag" JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local cds 54358 54468 . - . JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local exon 54358 54468 . - . insertions 0 ; deletions 0 JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local splice5 54356 54357 . - . intron_id 2 ; splice_site "GT" JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local intron 53797 54357 . - . intron_id 2 JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local splice3 53797 53798 . - . intron_id 1 ; splice_site "ag" JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local cds 53670 53796 . - . JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local exon 53670 53796 . - . insertions 0 ; deletions 0 JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local splice5 53668 53669 . - . intron_id 3 ; splice_site "GT" JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local intron 51698 53669 . - . intron_id 3 JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local splice3 51698 51699 . - . intron_id 2 ; splice_site "ag" JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local cds 51610 51697 . - . JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local exon 51610 51697 . - . insertions 0 ; deletions 0 JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local splice5 51608 51609 . - . intron_id 4 ; splice_site "GT" JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local intron 50122 51609 . - . intron_id 4 JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local splice3 50122 50123 . - . intron_id 3 ; splice_site "ag" JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local cds 50000 50121 . - . JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local exon 50000 50121 . - . insertions 0 ; deletions 0 JSZB01003988.1:subseq(427781,68193) exonerate:protein2genome:local similarity 50000 67502 976 - . alignment_id 1 ; Query SPP00000106_2.0 ; Align 67503 1 135 ; Align 54468 47 108 ; Align 53796 84 126 ; Align 51698 126 87 ; Align 50120 156 120 # --- END OF GFF DUMP --- # -- completed exonerate analysis