TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000100_2.0 # Protein # Selenoprotein S (SELENOS) # Human

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01003297.1 Manis javanica isolate MP_PG03-UM SCAFFOLD3701, ...  49.3    9e-13
  JSZB01022157.1 Manis javanica isolate MP_PG03-UM SCAFFOLD27863,...  47.4    6e-11


> JSZB01003297.1 Manis javanica isolate MP_PG03-UM SCAFFOLD3701, 
whole genome shotgun sequence
Length=105214

 Score = 49.3 bits (116),  Expect(2) = 9e-13, Method: Compositional matrix adjust.
 Identities = 42/90 (47%), Positives = 53/90 (59%), Gaps = 6/90 (7%)
 Frame = -2

Query  8      LSARPALETEGLRFLHTTVGSLLATYGWYIVFSCILLYVVFQKLSarlralrqrqldraa  67
              LS   +L+ E L FLH TVG+     G   +FSCILLY+V Q L   +     R+  +AA
Sbjct  84372  LSTWLSLDLEELHFLHITVGTCC---G**TIFSCILLYMVLQNL--FVWLRTMREP*QAA  84208

Query  68     aaVEPDVVVKRQEALAAARLKMQEELNAQV  97
                VE D VV+ QEAL A  LK+Q EL+ QV
Sbjct  84207  VLVESDSVVE*QEALPAINLKIQ-ELSVQV  84121


 Score = 46.6 bits (109),  Expect(2) = 9e-13, Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 26/31 (84%), Gaps = 1/31 (3%)
 Frame = -3

Query  137    EEDSPGPSTSSVLKR-KSDRKPLRGGGYNPL  166
              +EDSP PSTSS + R KSDRKPL+ GGYNPL
Sbjct  84023  QEDSPKPSTSSTIPR*KSDRKPLQKGGYNPL  83931


> JSZB01022157.1 Manis javanica isolate MP_PG03-UM SCAFFOLD27863, 
whole genome shotgun sequence
Length=357853

 Score = 47.4 bits (111),  Expect(2) = 6e-11, Method: Compositional matrix adjust.
 Identities = 24/28 (86%), Positives = 26/28 (93%), Gaps = 1/28 (4%)
 Frame = -2

Query  136     QEEDSPGPSTSSVL-KRKSDRKPLRGGG  162
               QEE+SPGPSTSS + KRKSDRKPLRGGG
Sbjct  329946  QEEESPGPSTSSAIPKRKSDRKPLRGGG  329863


 Score = 42.4 bits (98),  Expect(2) = 6e-11, Method: Compositional matrix adjust.
 Identities = 17/19 (89%), Positives = 19/19 (100%), Gaps = 0/19 (0%)
 Frame = -3

Query  118     MWDSMQEGKSYKGNAKKPQ  136
               MWDSMQEGKSYKGNA++PQ
Sbjct  330101  MWDSMQEGKSYKGNARRPQ  330045


 Score = 58.5 bits (140),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 29/33 (88%), Positives = 30/33 (91%), Gaps = 2/33 (6%)
 Frame = -1

Query  20      RFLHTTVGSLLATYGWYIVFSCILLYVVFQKLS  52
               RF   +VGSLLATYGWYIVFSCILLYVVFQKLS
Sbjct  334861  RFF--SVGSLLATYGWYIVFSCILLYVVFQKLS  334769


 Score = 55.5 bits (132),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 26/28 (93%), Positives = 27/28 (96%), Gaps = 0/28 (0%)
 Frame = -3

Query  70      VEPDVVVKRQEALAAARLKMQEELNAQV  97
               +EPDVVVKRQEALAAARLKMQEELN QV
Sbjct  332741  LEPDVVVKRQEALAAARLKMQEELNTQV  332658


 Score = 42.7 bits (99),  Expect = 0.005, Method: Compositional matrix adjust.
 Identities = 20/25 (80%), Positives = 20/25 (80%), Gaps = 0/25 (0%)
 Frame = -3

Query  1       MERQEESLSARPALETEGLRFLHTT  25
               MER  E LSARPALETEGL FLH T
Sbjct  335603  MERDGEQLSARPALETEGLHFLHIT  335529


 Score = 35.8 bits (81),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 15/15 (100%), Positives = 15/15 (100%), Gaps = 0/15 (0%)
 Frame = -2

Query  162     GYNPLSGEGGGACSW  176
               GYNPLSGEGGGACSW
Sbjct  328107  GYNPLSGEGGGACSW  328063



Lambda      K        H        a         alpha
   0.313    0.130    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 55387474296


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40