_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-53
 Query name: gi|961725478|ref|XP_014923053.1| PREDICTED: selenoprotein P isoform X1 [Acinonyx jubatus]
 Query range: 1-390  (total 391)

 Target: /data/www-rg/seblastian_results/369893497/tempfiles/temptarget.fasta
 Chromosome: JSZB01008296.1:subseq_450000,123000_ Strand: -
 Positions:
 -Exon 1  72951        73153
 -Exon 2  72043        72255
 -Exon 3  70663        70780
 -Exon 4  67468        68082

 Redox box: YES

Query   MWKSLGLALALCLLPWGRTESQGQSSFCKQPPAWSIRDQNPMLNSSGSVTVVALLQASUYLCILQASR <---Intron---> LEDLRVKLEQAGYLNI
        ||  ||||||||||| | | |||||| |||||||//| |/||||| |||||||||||||/|||||||| <   695bp    > |||||||||/ || ||
Target  MWGGLGLALALCLLPGGGTGSQGQSSLCKQPPAWTVRGQDPMLNSVGSVTVVALLQASUHLCILQASR                LEDLRVKLEKEGYSNI
        atggcgcgcgctcccgggagacgcatctacccgtagagcgcacatggtgagggcccgatcctaccgta                tggccgatgaggttaa
        tgggtgtctctgttcgggcggagagctgaacccgctggaacttactgctcttcttacggatgttaccg                taatgtataaagacat
        ggacggtcgcctccggaaggcgggccctggcacgcggcatgggcgtgagtgctttgccacgctggtc                agacgaaaggaaattcc
                                                                  *                                         

Query   SYVVVNHQGLSSRLKYMHLKNKVSEHIPVYQQEENETDVWTLLNGKKDDFFVYDR <---Intron---> CGRLVYHLGLPYSFLTFPYVEEAIKIAYC
        |||||||||/||||||/|||/||||/| ||||||//|||||||||/|||| /||| <   1262bp   > |||||| | |||||| |||||||||||||
Target  SYVVVNHQGISSRLKYIHLKDKVSENISVYQQEESQTDVWTLLNGQKDDFLIYDR                CGRLVYQLSLPYSFLVFPYVEEAIKIAYC
        ttgggaccgattctataccagagtgaatgtccggacaggtactagcaggtcatga                tgccgtccatctttcgtctggggaaagtt
        catttaaagtccgtaatataaatcaatctaaaaagacatgcttagaaaatttaag                gggttaatgtcacttttcataactatcag
        cttttttaacttaaacattatgtagttttcaaaacaatcgttatagatcccatc                accttgtattgtcccaccatgaactgttcc
                                                                                                            

Query   EKKCGNCSLM <---Intron---> TPEDEDFCKIVSSATVGNTTEAPQPHHHHDHHHHHHHHNHEHGHQHHGNGELAENQQPETPDVPGHPPSQVPHN
        |||||||||| <   2580bp   > ||||||||| ||||||  |||||||     ||| |    | |||||  /|/|/|||||| || | |||    |/
Target  EKKCGNCSLM                TPEDEDFCKNVSSATVEQTTEAPQP----PHHHWHG---HVHGHQHLESGQLSENQQPEAPDAPVHPPPPGLHH
        gaatgattca                acggggttaagttgaggcaaggccc----cccctcg---cgcgccccgagcctgacccggcggcgcccccgccc
        aaaggagctt                ccaaaatgaatcccctaaccaccac----caaagag---atagaaataggatcaaaacaccacctaccccgtaa
        agatacctcg                aagtacctgtatgttgagccgcgga----tttcgtt---tgtgtgttattgtagtgaagaatttgccgtacttc
                                                                                                            

Query   HHKHKDHQRQGHPEDUDMPAGSESLQLSVPPKKLURKGCINQLHCKLPKDSELAPSSUCUHURHLIFEKTGSAITUQCKENLPSLCSUQGLWAEENVIES
        ||||| ||||||||/|||||||||||| || |||||||||||| ||||//||||||||||| |||/|||||||||||||||||||||||||| /||||||
Target  HHKHKGHQRQGHPENUDMPAGSESLQLPVPRKKLURKGCINQLLCKLPQNSELAPSSUCUHCRHLVFEKTGSAITUQCKENLPSLCSUQGLWVQENVIES
        ccacagccacgccgatgacggagatcccgccaactcagtaactctatccatgtgcaatttctcccgtgaagtgaatctagacctttatcgctgcgagagt
        aaaaagaagagacaagatccggagtatctcgaatggaggtaattgatcaacatccgggggaggatttaacgcctcgagaaatcctgggagtgtaaattac
        ctgcgccaagtcagcatgaaatataatttaaagcaagttacaaccggcataggctccacactacgataaagtaccagtaaccctatcagatgaggcctat
                       *                  *                      * * *             *           *            

Query   UQURLPPAAUHAIQQPKPTEASTNUSUENKAKMUKUPS
        |||||| ||| | || |||||||||||/|||/||||||
Target  UQURLPAAAUQASQQLKPTEASTNUSUKNKAEMUKUPS
        tctctcgggtcgacccacaggaaatataaaggatatct
        gaggtccccgacgaataccacgcagggaaacatgagcc
        agatgtatcagatggagcaaccctacaatgaagagata
        * *      *              * *      * *  
 Sequence until next stop: 
AACTAA
 N  * 

 Distance CDS-SECIS: 246 ; UGA-SECIS: 252

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JSZB01008296.1:subseq_450000,123000_ Strand = - Positions = 67221 - 67139
 Found by:  Infernal (score=27.55) Covels (score=28.49)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -13.77

         ..(((((((..........(((((((((((((((...............)))))))))))))))............)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         ..(((((((..........{[[{(((((((((.......-...........)))))))))}]]}........-...)))))))..
 target  AGCUUUCUACUUGCAUUAAUGAGAACAGAAACAGAAACU-AUGACCUAGGGGUUUCUGUUGGAUAGUUAGCA-AUUUAGAAAGGA
                            ****           ^^^                       ****