TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000082_2.0 # Protein # Selenoprotein P (SELENOP) # Human

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01008296.1 Manis javanica isolate MP_PG03-UM SCAFFOLD9631, ...    155   3e-38
  JSZB01005768.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6577, ...  35.8    3.7  


> JSZB01008296.1 Manis javanica isolate MP_PG03-UM SCAFFOLD9631, 
whole genome shotgun sequence
Length=588269

 Score =   155 bits (391),  Expect = 3e-38, Method: Compositional matrix adjust.
 Identities = 143/208 (69%), Positives = 158/208 (76%), Gaps = 3/208 (1%)
 Frame = -3

Query  177     LTTLKDEDFCKRVSLATVDKTVETPSPhyhhehhhnhghqhLGSSELSENQQPGAPNapt  236
                 T +DEDFCK VS ATV++T E P P +HH H H HGHQHL S +LSENQQP AP+AP 
Sbjct  518088  FQTPEDEDFCKNVSSATVEQTTEAPQPPHHHWHGHVHGHQHLESGQLSENQQPEAPDAPV  517909

Query  237     hpappglhhhhkhkgqhrqghpENRDMPA-SEDLQ--DLQKKLCRKRCINQLLCKLPTDS  293
               HP PPGLHHHHKHKG  RQGHPEN DMPA SE LQ    +KKL RK CINQLLCKLP +S
Sbjct  517908  HPPPPGLHHHHKHKGHQRQGHPEN*DMPAGSESLQLPVPRKKL*RKGCINQLLCKLPQNS  517729

Query  294     ELAPRSXCCHCRHLIFEKTGSAITXQCKENLPSLCSXQGLRAEENITESCQXRLPPAAXQ  353
               ELAP S C HCRHL+FEKTGSAIT QCKENLPSLCS QGL  +EN+ ES Q RLP AA Q
Sbjct  517728  ELAPSS*C*HCRHLVFEKTGSAIT*QCKENLPSLCS*QGLWVQENVIES*Q*RLPAAA*Q  517549

Query  354     ISQQLIPTEASASXRXKNQAKKXEXPSN  381
                SQQL PTEAS +   KN+A+  + PSN
Sbjct  517548  ASQQLKPTEASTN*S*KNKAEM*K*PSN  517465


 Score =   140 bits (352),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 67/83 (81%), Positives = 74/83 (89%), Gaps = 1/83 (1%)
 Frame = -1

Query  62      CIL-QASKLEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQ  120
               CI  +  +LEDLRVKL+KEGYSNISY+VVNHQGISSRLKY HLK+KVSE+I VYQQEE+Q
Sbjct  522278  CIFPKYFRLEDLRVKLEKEGYSNISYVVVNHQGISSRLKYIHLKDKVSENISVYQQEESQ  522099

Query  121     TDVWTLLNGSKDDFLIYDRCGRL  143
               TDVWTLLNG KDDFLIYDRC  L
Sbjct  522098  TDVWTLLNGQKDDFLIYDRCVHL  522030


 Score = 79.3 bits (194),  Expect = 8e-14, Method: Compositional matrix adjust.
 Identities = 35/42 (83%), Positives = 36/42 (86%), Gaps = 0/42 (0%)
 Frame = -3

Query  139     RCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLTTL  180
               RCGRLVY L LP+SFL FPYVEEAIKIAYCEKKCGNCSL   
Sbjct  520782  RCGRLVYQLSLPYSFLVFPYVEEAIKIAYCEKKCGNCSLMVF  520657


 Score = 75.1 bits (183),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 35/42 (83%), Positives = 39/42 (93%), Gaps = 0/42 (0%)
 Frame = -2

Query  27      LCKQPPAWSIRDQDPMLNSNGSVTVVALLQASXYLCILQASK  68
               LCKQPPAW++R QDPMLNS GSVTVVALLQAS +LCILQAS+
Sbjct  523075  LCKQPPAWTVRGQDPMLNSVGSVTVVALLQAS*HLCILQASR  522950


> JSZB01005768.1 Manis javanica isolate MP_PG03-UM SCAFFOLD6577, 
whole genome shotgun sequence
Length=405825

 Score = 35.8 bits (81),  Expect = 3.7, Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 29/53 (55%), Gaps = 3/53 (6%)
 Frame = +2

Query  106     KVSEHIPVYQQEENQTDV---WTLLNGSKDDFLIYDRCGRLVYHLGLPFSFLT  155
               K++ HI   Q++  Q  +   W  LNG   DF+++  C  +V+ + + F+FL 
Sbjct  395225  KINIHIMYVQEKSTQGYIIEQWQFLNGRIMDFILFSLCILIVFMIRIGFNFLI  395383



Lambda      K        H        a         alpha
   0.315    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 208781055615


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40