------- SECIS element -- id:1 -- grade:A ---- Chromosome = JSZB01004690.1:subseq_40000,113000_ Strand = + Positions = 67055 - 67132 Found by: Infernal (score=16.94) Covels (score=20.94) Stem2 length = 9 Apical loop length = 18 Insertion in stem2 = 0, 0 Free Energy = -12.01 ..(((((((........(((((((((((((((................)))))))))))))))........))))))).. model uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ...(((({(........{[[{(((({(((((..................)))))}))))}]]}..--....)}))))... target CCAUGCCCACCUCUCCAUGACGGCAGAGAUGCCCAGUCAAGACCUGACCCGUCUGUGUCUGAUGC--GGACUCGGCAGCC **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = JSZB01004690.1:subseq_40000,113000_ Strand = - Positions = 107422 - 107380 Found by: Infernal (score=10.26) Stem2 length = 10 Apical loop length = 15 Insertion in stem2 = 0, 0 Free Energy = -19.16 ..(((((((.......(((((((((((((((...................)))))))))))))))........))))))).. model uccgggcaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugcccggc ----------------([[(((((((((((------...............)))))))))))]])----------------- target ----------------UGAAGCCCCUGCCU------AGCCUGGUACUGGGGAGGCAGGGGUUGAG----------------- **** ^^ ****