TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000081_2.0 # Protein # Selenoprotein O (SELENOO) # Human

Length=669
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01004690.1 Manis javanica isolate MP_PG03-UM SCAFFOLD5341, ...    120   1e-47
  JSZB01063070.1 Manis javanica isolate MP_PG03-UM SCAFFOLD102259...  48.1    8e-04


> JSZB01004690.1 Manis javanica isolate MP_PG03-UM SCAFFOLD5341, 
whole genome shotgun sequence
Length=368659

 Score =   120 bits (300),  Expect(2) = 1e-47, Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 83/139 (60%), Gaps = 32/139 (23%)
 Frame = +3

Query  563     RARLDKDLEGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSE-------  615
               RARL+KD E AG  AAWQAEH+ VMHANNPKY+LRNY+AQNAIEAAE GDFSE       
Sbjct  106548  RARLEKDREDAGGDAAWQAEHMSVMHANNPKYILRNYMAQNAIEAAENGDFSEASTAGTA  106727

Query  616     ----------------------VRRVLKLLETPY---HCeagaatdaeateadgadgRQR  650
                                     V+RVLKLLE PY      A      E  EA GA G Q 
Sbjct  106728  ARGSCSRGGPGWEGHP*HGLSQVQRVLKLLEAPYARDGDTAQVLEATELGEASGAAGGQH  106907

Query  651     SYSSKPPLWAAELCVTXSS  669
                YSSKPPLWAAELCVT SS
Sbjct  106908  PYSSKPPLWAAELCVT*SS  106964


 Score = 96.7 bits (239),  Expect(2) = 1e-47, Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 52/63 (83%), Gaps = 0/63 (0%)
 Frame = +2

Query  501     RQLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAELQSRNQGHWADWLQ  560
               RQLSMMLMLAQSNPQL AL+GTRA + +ELERVEQQSRLEQLS   L SRN+ HW  WLQ
Sbjct  106259  RQLSMMLMLAQSNPQLLALIGTRANLTKELERVEQQSRLEQLSPDALLSRNRAHWDLWLQ  106438

Query  561     AYR  563
                YR
Sbjct  106439  EYR  106447


 Score =   149 bits (376),  Expect = 4e-35, Method: Compositional matrix adjust.
 Identities = 86/116 (74%), Positives = 97/116 (84%), Gaps = 0/116 (0%)
 Frame = +2

Query  354     FLDRYDPDHVCNASDNTGRYAYSKQPEVCRWNLRKlaealqpelplelgeaILAEEFDAE  413
                  RYDPDHVCNASDNTGRY+YSKQPEVC+WNL+KLAEAL+PELP ELG+AILAEEFD  
Sbjct  102662  LCGRYDPDHVCNASDNTGRYSYSKQPEVCKWNLQKLAEALEPELPHELGKAILAEEFDTT  102841

Query  414     FQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLTGADFTNTFYLLSSFPVELE  469
               F+RHYLQKMRRKLGLV+ E EEDGALV+KLLETMHLTG     T +   S P E++
Sbjct  102842  FRRHYLQKMRRKLGLVRAEREEDGALVAKLLETMHLTGEWAQCTCHPGLSIPAEVK  103009


 Score =   137 bits (345),  Expect = 3e-31, Method: Compositional matrix adjust.
 Identities = 63/70 (90%), Positives = 69/70 (99%), Gaps = 0/70 (0%)
 Frame = +2

Query  184    SRQADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTV  243
              SRQADGRKVLRSSIREFLCSEAMFHLG+PTTRAGACVTS+STV+RD+FYDGNPKYE CTV
Sbjct  99173  SRQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVMRDMFYDGNPKYEPCTV  99352

Query  244    VLRVASTFIR  253
              VLR+ASTF+R
Sbjct  99353  VLRIASTFLR  99382


 Score =   117 bits (293),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 54/63 (86%), Positives = 58/63 (92%), Gaps = 0/63 (0%)
 Frame = +1

Query  253     RFGSFEIFKSADEHTGRAGPSVGRNDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFFR  312
               RFGSFEIFK ADEHTGR+GPSVGRNDIRVQ+LDYVI +FYPEIQAAH   SVQRNAAFFR
Sbjct  100708  RFGSFEIFKPADEHTGRSGPSVGRNDIRVQILDYVIGTFYPEIQAAHGGHSVQRNAAFFR  100887

Query  313     EVT  315
               EV+
Sbjct  100888  EVS  100896


 Score =   102 bits (255),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 48/55 (87%), Gaps = 0/55 (0%)
 Frame = +2

Query  308     AAFFREVTRRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFLDRYDPDH  362
                    +VTRRTARMVAEWQCVGFCHGVLNTDNMSI+GLTIDYGPFGF+DR+ P +
Sbjct  102125  GPILPQVTRRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFMDRWAPRN  102289


 Score = 74.7 bits (182),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 38/49 (78%), Positives = 39/49 (80%), Gaps = 0/49 (0%)
 Frame = +2

Query  453     DFTNTFYLLSSFPVELESPGLAEFLARLMEQCASLEELRLAFRPQMDPR  501
               DFTNTF LLSSFP   +S GL EFL  L  QCASLEELRLAFRPQMDPR
Sbjct  105242  DFTNTFSLLSSFPAGPQSLGLDEFLTALTAQCASLEELRLAFRPQMDPR  105388


> JSZB01063070.1 Manis javanica isolate MP_PG03-UM SCAFFOLD102259, 
whole genome shotgun sequence
Length=1168

 Score = 48.1 bits (113),  Expect = 8e-04, Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 7/66 (11%)
 Frame = -1

Query  558  WLQAYRARLDKDLEGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSEVR  617
            W+  YRARL    E   DAA   A     M+  NPK+VLRN++A+ AI  A+  DFSEV 
Sbjct  736  WVNDYRARLSH--ETRDDAARAIA-----MNRVNPKFVLRNHLAETAIRRAKEKDFSEVE  578

Query  618  RVLKLL  623
            R+  +L
Sbjct  577  RLAAVL  560


 Score = 40.4 bits (93),  Expect = 0.21, Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 0/25 (0%)
 Frame = -2

Query  362   HVCNASDNTGRYAYSKQPEVCRWNL  386
             ++CN SD+ GRYAY  QP++  WNL
Sbjct  1167  YICNHSDSQGRYAYKMQPQIAYWNL  1093



Lambda      K        H        a         alpha
   0.322    0.135    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 444974878251


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40