TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000079_2.0 # Protein # Selenoprotein N (SELENON) # Human

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01007029.1 Manis javanica isolate MP_PG03-UM SCAFFOLD8080, ...    135   6e-31


> JSZB01007029.1 Manis javanica isolate MP_PG03-UM SCAFFOLD8080, 
whole genome shotgun sequence
Length=514329

 Score =   135 bits (339),  Expect = 6e-31, Method: Compositional matrix adjust.
 Identities = 65/75 (87%), Positives = 68/75 (91%), Gaps = 1/75 (1%)
 Frame = +1

Query  177     FLGVSRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQ-ELGEPWWIIPSELSMFTGYL  235
                L VSRLAL+GLRNWT AASPSAVFA RHF+PFLPPPG  ELGEPWWIIP ELS+FTGYL
Sbjct  163075  LLQVSRLALTGLRNWTTAASPSAVFAARHFRPFLPPPGHAELGEPWWIIPGELSVFTGYL  163254

Query  236     SNNRFYPPPPKGKEV  250
               SNNRFYPPPPKGKEV
Sbjct  163255  SNNRFYPPPPKGKEV  163299


 Score =   130 bits (328),  Expect = 1e-29, Method: Compositional matrix adjust.
 Identities = 62/66 (94%), Positives = 65/66 (98%), Gaps = 0/66 (0%)
 Frame = +1

Query  364     QMELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEVAMY  423
               QMELEATGPSVPSVILDEDG+MIDSHLPSGEPLQFVFEEI WQQEL+WEEAA+RLEVAMY
Sbjct  166213  QMELEATGPSVPSVILDEDGNMIDSHLPSGEPLQFVFEEINWQQELNWEEAAQRLEVAMY  166392

Query  424     PFKKVS  429
               PFKKVS
Sbjct  166393  PFKKVS  166410


 Score =   103 bits (257),  Expect = 8e-21, Method: Compositional matrix adjust.
 Identities = 45/47 (96%), Positives = 46/47 (98%), Gaps = 0/47 (0%)
 Frame = +1

Query  291     RIHAEFQLSEPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHR  337
               RIHAEFQLSEPPDFPFWFSP QFTGHIILSKDATH+RDFRLFVPNHR
Sbjct  164200  RIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHIRDFRLFVPNHR  164340


 Score =   102 bits (253),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 49/56 (88%), Positives = 53/56 (95%), Gaps = 1/56 (2%)
 Frame = +3

Query  535     VHHINANYFLDITSVKPEEIESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP  590
               V HINANYFLDITS+KPE++E  +FSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP
Sbjct  169578  VQHINANYFLDITSMKPEDVE-KVFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP  169742


 Score = 98.6 bits (244),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 70/104 (67%), Gaps = 31/104 (30%)
 Frame = +3

Query  463     GSGRTLRETVLESSPILTLLNESFISTWSLVKeleelq----------------------  500
               GSGRTLRETVLES PIL LLNESFISTWSLV+ELE+LQ                      
Sbjct  167913  GSGRTLRETVLESPPILALLNESFISTWSLVRELEDLQVSGRWVRTALWESLGQC*GLSH  168092

Query  501     ---------nnqenSSHQKLAGLHLEKYSFPVEMMICLPNGTVV  535
                        NNQEN+SHQKLA LHLEKYSFPVEMMICLPNGTVV
Sbjct  168093  QVCAQLSP*NNQENASHQKLADLHLEKYSFPVEMMICLPNGTVV  168224


 Score = 94.0 bits (232),  Expect = 9e-18, Method: Compositional matrix adjust.
 Identities = 43/48 (90%), Positives = 45/48 (94%), Gaps = 0/48 (0%)
 Frame = +1

Query  244     PPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFR  291
               PP   +VIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTV+FR
Sbjct  163501  PPPSLQVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVLFR  163644


 Score = 73.6 bits (179),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 41/78 (53%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
 Frame = +3

Query  420     VAMYPFKKVSYLPFTEAFDRAKAENKLVHSILLWGALDDQSCXGSG--RTLRETV--LES  475
               +++  + +V+YLPFTEAF++AKA+NKLVHSILLWGALDDQSC G G   +LR     L +
Sbjct  166674  LSVSAWLQVTYLPFTEAFNQAKAKNKLVHSILLWGALDDQSC*GEGAPASLRGGCGRLHT  166853

Query  476     SPILTLLNESFISTWSLV  493
               S        S +S WS+V
Sbjct  166854  SWDAGDRETSGLSCWSMV  166907


 Score = 72.0 bits (175),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 36/47 (77%), Positives = 40/47 (85%), Gaps = 4/47 (9%)
 Frame = +3

Query  66      KTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSCSVTQTGVQW  112
               K LGT+GLFLFSSLDTD DMYISPEEFKPIAEKLTG    T++G+ W
Sbjct  156972  KALGTEGLFLFSSLDTDQDMYISPEEFKPIAEKLTG----TRSGLDW  157100


 Score = 63.2 bits (152),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 29/40 (73%), Positives = 33/40 (83%), Gaps = 0/40 (0%)
 Frame = +3

Query  331     LFVPNHRSLNVDMEWLYGASESSNMEVDIGYIPQMELEAT  370
               +  P  RSLNVDMEWLYGASESS+MEVDIGYIPQ+  +A 
Sbjct  165693  VLSPIPRSLNVDMEWLYGASESSSMEVDIGYIPQVSAQAV  165812


 Score = 55.1 bits (131),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 30/54 (56%), Positives = 31/54 (57%), Gaps = 3/54 (6%)
 Frame = +2

Query  155     TLTIEARFQPLLPETMTKSKDGFLGVSRLALSGLRNWTAAASPSAVFATRHFQP  208
               TL IEARFQPLLPE+MTKSKDGFLGVS   L G                RH  P
Sbjct  160331  TLNIEARFQPLLPESMTKSKDGFLGVS---LRGRHGRPPPVGADCRIICRHSPP  160483



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 379647879870


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40