------- SECIS element -- id:1 -- grade:B ---- Chromosome = JSZB01032570.1:subseq_37000,102000_ Strand = + Positions = 84058 - 84159 Found by: Infernal (score=14.75) Covels (score=7.77) Stem2 length = 11 Apical loop length = 23 Insertion in stem2 = 0, 0 Free Energy = -26.13 ..(((((((......................(((((((((((((((.......................)))))))))))))))..........))))))).. model uucggucaugcg---------------UuaAUGAcGgccuggcccuAAAcC--------cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc ...((((((((....................([[((((((((((((.......................))))))))))))]])......-.))))))))... target UUUGCACCUUUGCCCUGGGUUGGGUAACCAAUGAGGCCCUGUUCCUAACUGGCCGGUGUCCUCCGAGGAAGGGAUGGGGCUGAGGGUGUU-AGGGGGUGCUUU **** ^^ **** ------- SECIS element -- id:2 -- grade:A ---- Chromosome = JSZB01032570.1:subseq_37000,102000_ Strand = - Positions = 50195 - 50123 Found by: Infernal (score=14.31) Covels (score=21.06) Stem2 length = 9 Apical loop length = 18 Insertion in stem2 = 0, 0 Free Energy = -21.37 ..(((((((.......(((((((((((((((................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ((([(((((---....{[[{(({(((((((..................)))))))}))}]]}..--..-.)))))]))) target CUUGGGGAC---AGAAUGAAGUGCUCAGUGUCCCGGGAGUACCUCCCUCGCUGAGGGCCGACGC--CC-CGUCCCAGAG **** ^^ ****