_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:2     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-30
 Query name: gi|823406307|ref|XP_012417714.1| PREDICTED: selenoprotein M [Odobenus rosmarus divergens]
 Query range: 1-142  (total 142)

 Target: /data/www-rg/seblastian_results/751571143/tempfiles/temptarget.fasta
 Chromosome: JSZB01032570.1:subseq_37000,102000_ Strand: -
 Positions:
 -Exon 1  52338        52457
 -Exon 2  51111        51146
 -Exon 3  50894        50928
 -Exon 4  50461        50539
 -Exon 5  50232        50387

 Redox box: YES

Query   MHLPLPPPPLLLLLAALAAAVTTFRPDWNRLHGLARARVE <---Intron---> TCGGUQLNRLKE <---Intron---> VKAFVTQDIPLY <--
        ||/||||| ||||||| |/| ||||||||||||||||||| <   1191bp   > |||||||||||| <   182bp    > |||||||||| | <  
Target  MHVPLPPPALLLLLAAFASAATTFRPDWNRLHGLARARVE                TCGGUQLNRLKE                VKAFVTQDIPFY    
        acgcccccgcccccggtgtggaatccgtacccgcgcgcgg                atggtccaccag                gagtgacgactt    
        tatctcccctttttcctcccccctgcagagtagtcgcgta                cggggatagtaa                tacttcaatcta    
        gccggtgggggcatggcgccccccgccgctgtcgcacggg                ccgaaggtcggg                ggccccgccac     
                                                                    *                                       

Query   -Intron---> HNLVMKHLPGADPELVLLGHRYEELE <---Intron---> RIPLSEMTREEINELVQELGFYRKAAPDEPVPPEYLRAPAKPAEGA
         354bp    > |||||||||||||||||||||||||| <    73bp    > |||||||||||||||||||||||||||||||| |||||||/ || |
Target              HNLVMKHLPGADPELVLLGHRYEELE                RIPLSEMTREEINELVQELGFYRKAAPDEPVPTEYLRAPARSAESA
                    cacgaacccgggcgcgccgcctggcg                caccagaacggaagcgcgcgttcaggcggcgcagtccgcgatggag
                    aatttaatcgcacattttgagaaata                gtctgatcgaataattaatgtagacccaactccaatgcccgccagc
                   tccgagactgaccagcgggccccgagg                acaccggctggccgggggcccccgggccgtttcgcgggctgccact
                                                                                                            

Query   PDRPDL
        ||| ||
Target  PDRGDL
        cgcggc
        caggat
        gccccg
              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 36 ; UGA-SECIS: 327

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = JSZB01032570.1:subseq_37000,102000_ Strand = - Positions = 50195 - 50123
 Found by:  Infernal (score=14.31) Covels (score=21.06)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -21.37

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ((([(((((---....{[[{(({(((((((..................)))))))}))}]]}..--..-.)))))])))
 target  CUUGGGGAC---AGAAUGAAGUGCUCAGUGUCCCGGGAGUACCUCCCUCGCUGAGGGCCGACGC--CC-CGUCCCAGAG
                         ****           ^^                         ****