TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000077_2.0 # Protein # Selenoprotein M (SELENOM) # Human

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01032570.1 Manis javanica isolate MP_PG03-UM SCAFFOLD43260,...  77.4    9e-25
  JSZB01008602.1 Manis javanica isolate MP_PG03-UM SCAFFOLD10015,...  34.3    1.5  
  JSZB01058389.1 Manis javanica isolate MP_PG03-UM SCAFFOLD90201,...  33.9    2.0  
  JSZB01012465.1 Manis javanica isolate MP_PG03-UM SCAFFOLD14798,...  33.1    4.8  


> JSZB01032570.1 Manis javanica isolate MP_PG03-UM SCAFFOLD43260, 
whole genome shotgun sequence
Length=226171

 Score = 77.4 bits (189),  Expect(2) = 9e-25, Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 42/54 (78%), Gaps = 0/54 (0%)
 Frame = -2

Query  92     LERIPLSEMTREEINALVQELGFYRKAAPDAQVPPEYVWAPAKPPEETSDHADL  145
              L+RIPLSEMTREEIN LVQELGFYRKAAPD  VP EY+ APA+  E   D  DL
Sbjct  87393  LQRIPLSEMTREEINELVQELGFYRKAAPDEPVPTEYLRAPARSAESAPDRGDL  87232


 Score = 57.8 bits (138),  Expect(2) = 9e-25, Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 40/66 (61%), Gaps = 10/66 (15%)
 Frame = -1

Query  29     PDWNRLSGLTRARVE-TCGGXQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADPELVLLGR  87
              P W  L  +++A  + TC    L+ L  + +         HNLVMKHLPGADPELVLLG 
Sbjct  87631  PTWALLCIISKAPGDSTCLDPPLHHLNAISS---------HNLVMKHLPGADPELVLLGH  87479

Query  88     RYEELE  93
              RYEELE
Sbjct  87478  RYEELE  87461


 Score = 35.0 bits (79),  Expect = 1.0, Method: Compositional matrix adjust.
 Identities = 14/17 (82%), Positives = 15/17 (88%), Gaps = 0/17 (0%)
 Frame = -2

Query  27     YRPDWNRLSGLTRARVE  43
              +RPDWNRL GL RARVE
Sbjct  89388  FRPDWNRLHGLARARVE  89338


> JSZB01008602.1 Manis javanica isolate MP_PG03-UM SCAFFOLD10015, 
whole genome shotgun sequence
Length=105883

 Score = 34.3 bits (77),  Expect = 1.5, Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -1

Query  40     ARVETCGGXQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADPELVLLGR  87
              ARV  C   Q +R      F  + +P+YH++VM+HL    P L+ L +
Sbjct  20560  ARVSYC--RQQDRTYNQTGFTGRKLPWYHSVVMQHLATTLPGLINLSK  20423


> JSZB01058389.1 Manis javanica isolate MP_PG03-UM SCAFFOLD90201, 
whole genome shotgun sequence
Length=6495

 Score = 33.9 bits (76),  Expect = 2.0, Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (55%), Gaps = 2/53 (4%)
 Frame = -2

Query  40    ARVETCGGXQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADPELVLLGRRYEEL  92
             +RV  C   Q +R      F  + +P+YH++VM+HL    P L+ + +  EE+
Sbjct  1115  SRVNYC--RQQDRAYNQTGFPGRKLPWYHSVVMQHLATTLPRLINVSKS*EEV  963


> JSZB01012465.1 Manis javanica isolate MP_PG03-UM SCAFFOLD14798, 
whole genome shotgun sequence
Length=92744

 Score = 33.1 bits (74),  Expect = 4.8, Method: Composition-based stats.
 Identities = 24/84 (29%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
 Frame = +3

Query  32     NRLSGLTRARVETCGGXQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADPELVLLGRRYEE  91
              NR+   +  RV +CG     RLKEV + + Q +    +  +++L G+D E    G+R E 
Sbjct  43242  NRV*ENSTYRVWSCGK*VWERLKEVCSILEQILLGSGHNSLEYLSGSDLE----GKRNEA  43409

Query  92     LERIPLSEMTREEINALVQELGFY  115
              L ++ L  + +E++  L++++G++
Sbjct  43410  LFKLQL--VMKEQLLILIRKIGYW  43475



Lambda      K        H        a         alpha
   0.317    0.136    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 23511268760


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40