_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-12
 Query name: gi|1016682577|ref|XP_016065690.1| PREDICTED: selenoprotein K [Miniopterus natalensis]
 Query range: 1-94  (total 94)

 Target: /data/www-rg/seblastian_results/121488696/tempfiles/temptarget.fasta
 Chromosome: JSZB01010020.1:subseq_210000,72982_ Strand: -
 Positions:
 -Exon 1  56589        56607
 -Exon 2  53553        53643
 -Exon 3  52020        52103
 -Exon 4  51356        51443

 Redox box: no

Query   MVYIANG <---Intron---> QVLDSRSQSPWRLSLITDFFWGIAEFVVLF <---Intron---> FKTLLQQDVKKGRGYGSSSDSRYDDGRG <-
        ||||/|| <   2945bp   > ||||||||||||||||||||||||||| || <   1449bp   > ||||||||||| |||||||||||||||| < 
Target  MVYISNG                QVLDSRSQSPWRLSLITDFFWGIAEFVFLF                FKTLLQQDVKKRRGYGSSSDSRYDDGRG   
        agtatag                cgtgacactctatttaagtttgaggtgtct                taaccccggaaaagtgattgtatgggag   
        ttatca                gattagggaccggtcttcattggtcattttt                tacttaaataagggaggccacgaaaggg   
        gtccgc                aaggccgtacagaataaatctgaatgcgtg                tcatgtgatgagaaccaccttcacttaa    
                                                                                                            

Query   --Intron---> PPGNPPRRMGRINHLRGPSPPPMAGGUGR
          576bp    > |||||||||||||||||||||||||||||
Target               PPGNPPRRMGRINHLRGPSPPPMAGGUGR
                     ccgaccaaagcaaccagcacccagggtga
                     ccgaccggtggtaatggcgccctcggggg
                    gaaaccgaagtatttgacttttcgttaaag
                                               *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 332 ; UGA-SECIS: 338

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JSZB01010020.1:subseq_210000,72982_ Strand = - Positions = 51023 - 50936
 Found by:  Infernal (score=15.04) Covels (score=31.69)
 Stem2 length = 10   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -6.63

         ..(((((((..............(((((((((((((((.................)))))))))))))))..........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...({((((..............{[[(((({(((((((.................)))))))}))))]]}......-...))))})...
 target  UGCUCUGUGUCCUCACAGAUGAAUGAGGUCGUGCUGGGAAUUCCCCCCACAGGGAUCUGGCAGGACUGACAUGCAG-UUCUAUAAAAGC
                                ****           ^^                          ****