Command line: [exonerate -m p2g --showtargetgff -q SELENOK.fa.txt -t SELENOK.subseq.txt]
Hostname: [ws116044u]

C4 Alignment:
------------
         Query: SPP00000076_2.0 # Protein # Selenoprotein K (SELENOK) # Human 
        Target: JSZB01010020.1:subseq(210000,72982) Manis javanica isolate MP_PG03-UM SCAFFOLD11746, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 456
   Query range: 0 -> 94
  Target range: 56607 -> 51355

     1 : MetValTyrIleSerAsn{G}  >>>> Target Intron 1 >>>>  {ly}GlnVal :     9
         ||||||||||||||||||{|}           2945 bp           {||}||||||
         MetValTyrIleSerAsn{G}++                         ++{ly}GlnVal
 56607 : ATGGTTTACATCTCGAAC{G}gt.........................ag{GA}CAAGTG : 53638

    10 : LeuAspSerArgSerGlnSerProTrpArgLeuSerLeuIleThrAspPhePheTrpGly :    29
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LeuAspSerArgSerGlnSerProTrpArgLeuSerLeuIleThrAspPhePheTrpGly
 53637 : TTGGACAGCCGGAGTCAATCCCCATGGAGATTATCTTTAATAACAGATTTCTTTTGGGGA : 53578

    30 : IleAlaGluPheValValLeu{Ph}  >>>> Target Intron 2 >>>>  {e}Phe :    38
         ||||||||||||||| !!|||{||}           1449 bp           {|}|||
         IleAlaGluPheValPheLeu{Ph}++                         ++{e}Phe
 53577 : ATAGCTGAGTTCGTGTTTCTG{TT}gt.........................ag{T}TTC : 52102

    39 : LysThrLeuLeuGlnGlnAspValLysLysArgArgSerTyrGlyAsnSerSerAspSer :    58
         ||||||||||||||||||||||||||||||||||||.!!||||||!:!||||||||||||
         LysThrLeuLeuGlnGlnAspValLysLysArgArgGlyTyrGlySerSerSerAspSer
 52101 : AAAACTCTGCTTCAGCAAGATGTGAAAAAGAGAAGAGGCTACGGAAGCTCCTCTGATTCC : 52042

    59 : ArgTyrAspAspGlyArg{Gl}  >>>> Target Intron 3 >>>>  {y}ProPro :    67
         ||||||||||||||||||{||}            576 bp           {|}||||||
         ArgTyrAspAspGlyArg{Gl}++                         ++{y}ProPro
 52041 : AGATACGATGATGGAAGA{GG}gt.........................ag{G}CCACCA : 51439

    68 : GlyAsnProProArgArgMetGlyArgIleAsnHisLeuArgGlyProSerProProPro :    87
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyAsnProProArgArgMetGlyArgIleAsnHisLeuArgGlyProSerProProPro
 51438 : GGAAACCCCCCGAGAAGAATGGGTCGAATTAATCATCTGAGAGGCCCTAGTCCTCCTCCC : 51379

    88 : MetAlaGlyGlyUnkGlyArg :    94
         ||||||||||||   ||||||
         MetAlaGlyGly***GlyArg
 51378 : ATGGCTGGTGGATGAGGAAGG : 51356

vulgar: SPP00000076_2.0 0 94 . JSZB01010020.1:subseq(210000,72982) 56607 51355 - 456 M 6 18 S 0 1 5 0 2 I 0 2941 3 0 2 S 1 2 M 29 87 S 0 2 5 0 2 I 0 1445 3 0 2 S 1 1 M 27 81 S 0 2 5 0 2 I 0 572 3 0 2 S 1 1 M 29 87
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-22
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	gene	51356	56607	456	-	.	gene_id 1 ; sequence SPP00000076_2.0 ; gene_orientation +
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	cds	56589	56607	.	-	.	
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	exon	56589	56607	.	-	.	insertions 0 ; deletions 0
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	splice5	56587	56588	.	-	.	intron_id 1 ; splice_site "GT"
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	intron	53644	56588	.	-	.	intron_id 1
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	splice3	53644	53645	.	-	.	intron_id 0 ; splice_site "AG"
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	cds	53553	53643	.	-	.	
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	exon	53553	53643	.	-	.	insertions 0 ; deletions 0
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	splice5	53551	53552	.	-	.	intron_id 2 ; splice_site "GT"
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	intron	52104	53552	.	-	.	intron_id 2
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	splice3	52104	52105	.	-	.	intron_id 1 ; splice_site "AG"
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	cds	52020	52103	.	-	.	
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	exon	52020	52103	.	-	.	insertions 0 ; deletions 0
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	splice5	52018	52019	.	-	.	intron_id 3 ; splice_site "GT"
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	intron	51444	52019	.	-	.	intron_id 3
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	splice3	51444	51445	.	-	.	intron_id 2 ; splice_site "AG"
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	cds	51356	51443	.	-	.	
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	exon	51356	51443	.	-	.	insertions 0 ; deletions 0
JSZB01010020.1:subseq(210000,72982)	exonerate:protein2genome:local	similarity	51356	56607	456	-	.	alignment_id 1 ; Query SPP00000076_2.0 ; Align 56608 1 18 ; Align 53642 8 87 ; Align 52103 38 81 ; Align 51443 66 87
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis