TBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
           80,669 sequences; 2,547,379,330 total letters



Query= SPP00000076_2.0 # Protein # Selenoprotein K (SELENOK) # Human

Length=94
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  JSZB01010020.1 Manis javanica isolate MP_PG03-UM SCAFFOLD11746,...  62.0    5e-10
  JSZB01015768.1 Manis javanica isolate MP_PG03-UM SCAFFOLD19060,...  32.0    2.9  


> JSZB01010020.1 Manis javanica isolate MP_PG03-UM SCAFFOLD11746, 
whole genome shotgun sequence
Length=282983

 Score = 62.0 bits (149),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 29/30 (97%), Positives = 29/30 (97%), Gaps = 0/30 (0%)
 Frame = -2

Query  7       GQVLDSRSQSPWRLSLITDFFWGIAEFVVL  36
               GQVLDSRSQSPWRLSLITDFFWGIAEFV L
Sbjct  263644  GQVLDSRSQSPWRLSLITDFFWGIAEFVFL  263555


 Score = 49.3 bits (116),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 25/31 (81%), Positives = 26/31 (84%), Gaps = 1/31 (3%)
 Frame = -2

Query  33      FVVLF-FKTLLQQDVKKRRSYGNSSDSRYDD  62
               F   F FKTLLQQDVKKRR YG+SSDSRYDD
Sbjct  262120  FSACFSFKTLLQQDVKKRRGYGSSSDSRYDD  262028


> JSZB01015768.1 Manis javanica isolate MP_PG03-UM SCAFFOLD19060, 
whole genome shotgun sequence
Length=266901

 Score = 32.0 bits (71),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +2

Query  2       VYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDV----KKRRSYGN  54
               +Y+    +L+  S   W LSLI+D FW +  F  L    LL   V    KK+R  G+
Sbjct  183851  MYLHISIILNLSSMCMWELSLISDVFWWLLFFP*LILPRLLFYSVINKKKKKRGLGS  184021



Lambda      K        H        a         alpha
   0.325    0.138    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 21089007050


  Database: /export/cursos/20428/BI/genomes/2016/Manis_javanica/genome.fa
    Posted date:  Oct 21, 2016  4:42 PM
  Number of letters in database: 2,547,379,330
  Number of sequences in database:  80,669



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40