_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-11
 Query name: gi|1044392144|ref|XP_017401022.1| PREDICTED: ethanolaminephosphotransferase 1 isoform X1 [Cebus capucinus imitator]
 Query range: 1-397  (total 397)

 Target: /data/www-rg/seblastian_results/290699685/tempfiles/temptarget.fasta
 Chromosome: JSZB01006584.1:subseq_0,81917_ Strand: -
 Positions:
 -Exon 1  72324        72380
 -Exon 2  54782        54850
 -Exon 3  54223        54331
 -Exon 4  51979        52053
 -Exon 5  48702        48964
 -Exon 6  47647        47755
 -Exon 7  40161        40209
 -Exon 8  38450        38630
 -Exon 9  37088        37270
 -Exon 10 33790        33885

 Redox box: no

Query   MAGYEYVSPEQLAGFDKYK <---Intron---> YSAVDTNPLSLYVMHPFWNTIVK <---Intron---> VFPTWLAPNLITFSGFLLVVFNFLLM
        ||||||||||||||||||| <  17473bp   > |||/|||||||||||||||/||| <   450bp    > ||||||||||||||||||||||||||
Target  MAGYEYVSPEQLAGFDKYK                YSALDTNPLSLYVMHPFWNSIVK                VFPTWLAPNLITFSGFLLVVFNFLLM
        aggtgtgacgccggtgata                tagcgaacctctgaccttaaaga                gtcatcgcacaattgtccggtatcca
        tcgaaatgcaatcgtaaaa                agctacactctattactgagtta                ttccgtccattctcgttttttatttt
        gttcacgcggggttttgcg                tttgcttagtgtcgtatgctaag                gtttggtatgacttctggtactcatg
                                                                                                            

Query   AYFDPDFYASA <---Intron---> PGHKHVPDWVWIVVGILNFVAYTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDSWSCVYF
        ||||||||||| <   2169bp   > ||||||||||||/|||||| ||||| <   3014bp   > ||||||||||||||||||||||||||||||||
Target  AYFDPDFYASA                PGHKHVPDWVWIIVGILNFTAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWSCVYF
        gttgcgttgtg                cgcacgcgtgtaaggacatagtacg                ggggacgcaaataactggctgcgcgatttgtt
        catacatacc                ccgaaatcagtgtttgttatccact                agtagaacggcacgcctgattaagtaggcgtat
        actttcttta                aatcgtattgtgcagcccccactta                ttgtagacgactccccaggttctcgttgattct
                                                                                                            

Query   VVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV <---Intron---> TISFVYIVTAVVGVEAWYEPFLFNFLYRD
        ||||||||||| /|||||||||||||||||||||||||||||||||||||||||| <   946bp    > ||| |||||//||||||||||||||||||
Target  VVTVYSIFGRGPSGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV                TISLVYIVTSIVGVEAWYEPFLFNFLYRD
        ggagttatgcgctggagtgctccctggttttactctgataagactcctgtgaacg                aatcgtagatagggggttgctctatttag
        ttctacttgggccgtgttttatttgttttctttcagaaaacgttttcggaatgat                ctcttattccttgtacgaactttattaga
        tatgtcctaaaattcttttttcgagatgttccgtcgagtcagttcgagatctcag                ttttccagtgtgatgcgtatcgttcatac
                                                                                                            

Query   LFTTMIIG <---Intron---> CALCVTLPMSLLNFFR <---Intron---> SYKNNTLKHNSVYEAMVPFFSPCLLFILSTAWILWSPSDILEIH
        ||| |||| <   7437bp   > |||||||||||||||| <   1530bp   > |||||||||/|||||||||||||||||||||||| |||/|||||
Target  LFTAMIIG                CALCVTLPMSLLNFFR                SYKNNTLKHSSVYEAMVPFFSPCLLFILSTAWILQSPSNILEIH
        ctagaaag                tgttgaccaattatta                ataaaatacatgtggagctttcttctattagtacctctaatgac
        ttccttt                ggctgtctctgttattg                gaaaactaagctaacttcttccgtttttcccgttacccattata
        actagtt                ttaatgttagtaactc                actatccgactactatgtccttatgactgtaagccgatattagat
                                                                                                            

Query   PRIFYFMVGTAFANIT <---Intron---> CQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVSSYIESIILYTLTTAFTLAHIHYGVRV <---In
        ||/||||||||||| | <   1179bp   > |||||||||||||||||||||||||||/||||||/| /|||/||||||||||||/|||||| <   32
Target  PRVFYFMVGTAFANST                CQLIVCQMSSTRCPTLNWLLVPLFLVVVVVNLGVASNLESILLYTLTTAFTLAHVHYGVRV       
        cagtttaggagtgaaa                tccagtcaaaactcatattcgccttgggggatgggtacgaacctataagtacgcgctggcg       
        cgttatttgcctcagc                gatttgatggcggcctagtttcttttttttatgtccatagtttactccctctcataagtgt       
        taacccgtaattccca                tagtttagctcgcatgcgggttccgtcggacaaactctgctcctgaattctgctcttagag       
                                                                                                            

Query   tron---> VKQLSSHFQIYPFSLRKPNSDULGMEEKNIGL
        02bp   > ||||||||||||||||||||||||||||||||
Target           VKQLSSHFQIYPFSLRKPNSDULGMEEKNIGL
                 gaccaactcatctttaacatgtcgaggaaagc
                 taatggatatactctgacacagtgtaaaatgt
                 agggccttgtcccaggaacataaagaagttcg
                                      *          
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1298 ; UGA-SECIS: 1328

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JSZB01006584.1:subseq_0,81917_ Strand = - Positions = 32491 - 32413
 Found by:  Infernal (score=24.6) Covels (score=16.46)
 Stem2 length = 10   Apical loop length = 20   Insertion in stem2 = 0, 1
 Free Energy = -8.95

         ..(((((((.......(((((((((((((((..................))))).))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         ...(({((((......{[[[((((((((((....................)))).))))))]]]}..--..-))))}))...
 target  GGAGUUUGUGCUUGAAUGAAGAGUGUGUCUUAAACUCCCCUUUUUUGGAUGGAUUGCACUUGGAUAA--AA-UACACACCAC
                         ****           ^^^                           ****